jsbmlcelldesigner2014.blogspot.com

GSoC 2014- JSBML

Saturday, August 23, 2014. I am very excited to say that my project for GSoC is complete! I spent 5 days in Los Angeles at COMBINE 2014. I presented on August the 20th. Presentation link and video link are below. Tuesday, August 5, 2014. The Final Week is here! I have quite a bit to report on the advancement of my project. My current checklist was as so:. 1 Complete synchronization of CellDesigner plugin model and JSBML. 2 maintain map of SBases. 2 Finish Render Extension additions. On the Layout front, ...

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GSoC 2014- JSBML | jsbmlcelldesigner2014.blogspot.com Reviews

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Saturday, August 23, 2014. I am very excited to say that my project for GSoC is complete! I spent 5 days in Los Angeles at COMBINE 2014. I presented on August the 20th. Presentation link and video link are below. Tuesday, August 5, 2014. The Final Week is here! I have quite a bit to report on the advancement of my project. My current checklist was as so:. 1 Complete synchronization of CellDesigner plugin model and JSBML. 2 maintain map of SBases. 2 Finish Render Extension additions. On the Layout front, ...

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GSoC 2014- JSBML | jsbmlcelldesigner2014.blogspot.com Reviews

https://jsbmlcelldesigner2014.blogspot.com

Saturday, August 23, 2014. I am very excited to say that my project for GSoC is complete! I spent 5 days in Los Angeles at COMBINE 2014. I presented on August the 20th. Presentation link and video link are below. Tuesday, August 5, 2014. The Final Week is here! I have quite a bit to report on the advancement of my project. My current checklist was as so:. 1 Complete synchronization of CellDesigner plugin model and JSBML. 2 maintain map of SBases. 2 Finish Render Extension additions. On the Layout front, ...

INTERNAL PAGES

jsbmlcelldesigner2014.blogspot.com

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GSoC 2014- JSBML: Calculating ReactionGlyph position in CellDesigner and new Plugin

http://jsbmlcelldesigner2014.blogspot.com/2014/07/calculating-reactionglyph-position-in.html

Wednesday, July 2, 2014. Calculating ReactionGlyph position in CellDesigner and new Plugin. CellDesigner does not make its Reaction position data available for developers to access. Therefore, we need to figure out how to determine Reaction size and position using our own algorithms. We have two choices:. 1 Create a BoundingBox with x,y, height and width. 2 Create a Curve for both the ReactionGlyph and the SpeciesReferenceGlyphs. ReactionGlyph curve segment will be in the middle of the Reaction. While do...

2

GSoC 2014- JSBML: Project Completion

http://jsbmlcelldesigner2014.blogspot.com/2014/08/project-completion.html

Saturday, August 23, 2014. I am very excited to say that my project for GSoC is complete! I spent 5 days in Los Angeles at COMBINE 2014. I presented on August the 20th. Presentation link and video link are below. Subscribe to: Post Comments (Atom). View my complete profile. The Final Week is here! Picture Window theme. Powered by Blogger.

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GSoC 2014- JSBML: Aftermath of 17/7 Meeting

http://jsbmlcelldesigner2014.blogspot.com/2014/07/aftermath-of-177-meeting.html

Friday, July 18, 2014. Aftermath of 17/7 Meeting. I presented the slideshow below to Professor Funahashi (Akira), the main developer of CellDesigner, and my mentors at 15:00 UTC on 17/7/2014. The presentation was a success because Akira was able to provide me with inside information and clarity to my work with CellDesigner. I asked questions at the end of the presentation which I will share answers with now:. Location: Milwaukee, WI, USA. Subscribe to: Post Comments (Atom). View my complete profile.

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GSoC 2014- JSBML: Midterm Presentation

http://jsbmlcelldesigner2014.blogspot.com/2014/06/midterm-presentation.html

Thursday, June 26, 2014. Here are my slides that I presented today for the midterm evaluation meeting:. Dr Hucka linked me to some Layout Extension links that I should look into further. They are here:. Frank wrote an online SBML layout viewer:. Http:/ sysbioapps.dyndns.org/. COPASI should support reading layout:. There are more tools that mention SBML layout support, at. Http:/ sbml.org/SBML Software. Things are going well with my project. These are my future plans:. Subscribe to: Post Comments (Atom).

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GSoC 2014- JSBML: July 2014

http://jsbmlcelldesigner2014.blogspot.com/2014_07_01_archive.html

Monday, July 28, 2014. Synchronizing CellDesigner and JSBML, Contact with Akira and Checklist. Just a quick update since it is late here, but over the past week, I have been continuing with my synchronization of the JSBML/CellDesigner(CD) model representations. I have added a Map PluginSBase, Set SBase . The key is the CD object and all JSBML objects associated with the CD object. My questions to him:. Is there is an accurate way to determine the reaction direction, be it North-South, East-West, etc?

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news.open-bio.org

OBF Google Summer of Code students 2014 | O|B|F News

https://news.open-bio.org/news/2014/04/obf-gsoc-students-2014

O B F News. Open Source Bioinformatics news. Catering at BOSC CodeFest 2014. Biopython 1.64 released →. OBF Google Summer of Code students 2014. April 26, 2014. Hi all, I’m pleased to announce the acceptance of OBF’s Google Summer of Code 2014 (GSoC). Sarah Berkemer – “. Open source high-performance BioHaskell. 8221; (Mentors: Christian Höner zu Siederdissen, Ketil Malde) ( blog. Loris Cro – “. An ultra-fast scalable RESTful API to query large numbers of VCF datapoints. Victor Kofia – “. We are now in th...

lhwatanabe.blogspot.com

GSoC 2014 [Leandro Watanabe] - JSBML: August 2014

http://lhwatanabe.blogspot.com/2014_08_01_archive.html

GSoC 2014 [Leandro Watanabe] - JSBML. Thursday, August 21, 2014. The Google Summer of Code program is over. I had an amazing time working on this project. I really enjoyed working in this project and I am thankful for this opportunity. I am happy with my results and, hopefully, I can continue to contribute to the community. In summary, this summer I implemented:. The extension is simple, but flattening and validation can be quite tricky since arrays have many implications on the math. This model has 1000...

lhwatanabe.blogspot.com

GSoC 2014 [Leandro Watanabe] - JSBML: Project Wrap-up

http://lhwatanabe.blogspot.com/2014/08/project-wrap-up.html

GSoC 2014 [Leandro Watanabe] - JSBML. Thursday, August 21, 2014. The Google Summer of Code program is over. I had an amazing time working on this project. I really enjoyed working in this project and I am thankful for this opportunity. I am happy with my results and, hopefully, I can continue to contribute to the community. In summary, this summer I implemented:. The extension is simple, but flattening and validation can be quite tricky since arrays have many implications on the math. This model has 1000...

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jsbmlcelldesigner2014.blogspot.com

GSoC 2014- JSBML

Saturday, August 23, 2014. I am very excited to say that my project for GSoC is complete! I spent 5 days in Los Angeles at COMBINE 2014. I presented on August the 20th. Presentation link and video link are below. Tuesday, August 5, 2014. The Final Week is here! I have quite a bit to report on the advancement of my project. My current checklist was as so:. 1 Complete synchronization of CellDesigner plugin model and JSBML. 2 maintain map of SBases. 2 Finish Render Extension additions. On the Layout front, ...

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