kentinformatics.com kentinformatics.com

kentinformatics.com

Kent Informatics, Inc.

Kent Informatics, Inc. is a small bioinformatics software company based in Santa Cruz, California. We provide scientists with tools to analyze the human genome, particularly, BLAT - The BLAST-like Alignment Tool.

http://www.kentinformatics.com/

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Kent Informatics, Inc. | kentinformatics.com Reviews
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Kent Informatics, Inc. is a small bioinformatics software company based in Santa Cruz, California. We provide scientists with tools to analyze the human genome, particularly, BLAT - The BLAST-like Alignment Tool.
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Kent Informatics, Inc. | kentinformatics.com Reviews

https://kentinformatics.com

Kent Informatics, Inc. is a small bioinformatics software company based in Santa Cruz, California. We provide scientists with tools to analyze the human genome, particularly, BLAT - The BLAST-like Alignment Tool.

INTERNAL PAGES

kentinformatics.com kentinformatics.com
1

Our Products

http://www.kentinformatics.com/products.html

Faster. More Accurate. That Simple. BLAT is a bioinformatics software a tool which performs rapid mRNA/DNA and cross-species protein alignments. BLAT is more accurate and 500 times faster than popular existing tools for mRNA/DNA alignments and 50 times faster for protein alignments at sensitivity settings typically used when comparing vertebrate sequences. (Source: Kent, W.J. 2002. BLAT - The BLAST-Like Alignment Tool. Genome Research 4: 656-664.). BLAST Farm Headaches Got You Down? This bioinformatics t...

2

About Jim Kent and Kent Informatics, Inc.

http://www.kentinformatics.com/about-us.html

About Jim Kent and Kent Informatics, Inc. Kent Informatics was incorporated in 2003 to manage commerical licensing of Jim's popular scientific software. O'Reilly Interview with Jim Kent. Keeping Genome Data Open (04/05/2002). By Bruce Stewart. Jim talks about his work on the human genome assembly and the importance of open data. New York Times Article on Jim Kent. Reading the Book of Life; Grad Student Becomes Gene Effort's Unlikely Hero (2/13/2001). BLAT and Other Fine Software.

3

Resources

http://www.kentinformatics.com/resources.html

Jim Kent's Web Page. Human Genome Browser at UCSC. BLAT and Other Fine Software.

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fifthdimension.jp fifthdimension.jp

Life is fifthdimension.::Products::Assams-assembler

https://www.fifthdimension.jp/products/assams

Assams-assembler is a high-throughput long-read assembler based on overlap/layout/consensus framework. This assembler is highly parallelized and extended version Minimus assembler in AMOS. Assembly of huge number of sequences from massively parallel DNA sequencers. Fast overlap detection using modified parallel BLAT. Sensitive overlap detection using hash-overlap in AMOS. Modified version of AMOS (included). Modified version of parallel BLAT (included). General Public License, version 2. Alpha testing re...

stjuderesearch.org stjuderesearch.org

St. Jude Research | Zhang laboratory

http://www.stjuderesearch.org/site/lab/zhang

Chen, Taosheng, PhD, PMP. Evans, William E., PharmD. Fujii, Naoaki, PhD. Guy, Kip R., PhD. Kriwacki, Richard W., PhD. Lee Richard E., PhD. McKinney-Freeman, Shannon, PhD. Mittag, Tanja, PhD. Moldoveanu, Tudor, PhD. Mullighan, Charles, MBBS(Hons), MSc, MD. Nichols, Kim E., MD. Northcott, Paul A., PhD. Peng, Junmin, PhD. Potter, Philip M., PhD. Roberts, Charles W. M., MD, PhD. Rivas, Fatima, PhD. Shelat, Anang, PhD. Snyder, Scott E., PhD. Stewart, Clinton, PharmD. Zhang, Jinghui, PhD. Behm, Fred G., MD.

genomewiki.cse.ucsc.edu genomewiki.cse.ucsc.edu

Minimal Browser Installation - Genomewiki

http://genomewiki.cse.ucsc.edu/index.php/Browser_installation

Redirected from Browser installation. This page is not necessarily maintained with the most up-to-date information. The information in the README files in the source tree is guaranteed to be current: src/product. Usually a browser installation wants to be a subset of all data from a selection of genomes compared to the entire UCSC Genome Browser. Or on this wiki ( Browser installation. Please note the full discussion in the README.* files and scripts to assist with these browser installation procedur...

genome.ucsc.edu genome.ucsc.edu

UCSC Genome Browser Blog

http://genome.ucsc.edu/blog

UCSC Genome Browser Blog. GTEx Resources in the Browser. Have you been wondering when we’ll get some of that next-gen gene expression in human tissues up as tracks in the browser? The GNF Atlas microarray tracks are. 2004 Yes, we do have RNA-seq from ENCODE cell lines, but you can get only so far with cell lines (are they even human? Well, wait no longer! Once we learned what the GTEx folks are up to RNA-seq and genotyping of samples from 53 tissues in many hundreds of donors we just had to get on board!

genomewiki.ucsc.edu genomewiki.ucsc.edu

Minimal Browser Installation - Genomewiki

http://genomewiki.ucsc.edu/index.php/Browser_installation

Redirected from Browser installation. This page is not necessarily maintained with the most up-to-date information. The information in the README files in the source tree is guaranteed to be current: src/product. Usually a browser installation wants to be a subset of all data from a selection of genomes compared to the entire UCSC Genome Browser. Or on this wiki ( Browser installation. Please note the full discussion in the README.* files and scripts to assist with these browser installation procedur...

genome.ucsc.edu genome.ucsc.edu

UCSC Genome Browser: Blat Specification and User's Guide

https://genome.ucsc.edu/goldenPath/help/blatSpec.html

Reset All User Settings. Blat Suite Program Specifications and User Guide. Blat produces two major classes of alignments:. At the DNA level between two sequences that are of 95% or greater identity, but which may include large inserts. At the protein or translated DNA level between sequences that are of 80% or greater identity and may also include large inserts. As well as several other formats. The main programs in the blat suite are:. Other programs in the blat suite are:. Ndash; converts alignments fr...

hgwdev-sugnet.cse.ucsc.edu hgwdev-sugnet.cse.ucsc.edu

Genome Browser Licensing

http://hgwdev-sugnet.cse.ucsc.edu//license

An error occurred while processing this directive]. Obtaining a Commercial License for the Genome Browser. The Genome Browser binaries and source code are freely available for academic, nonprofit, and personal use. A license is required for commercial download and installation of most Genome Browser binaries and source code, with the exception of the items in the following directories that are freely available for all uses:. Kent/src/utils (includes big* tools). Read and sign the licensing agreement.

genome-asia.ucsc.edu genome-asia.ucsc.edu

Genome Browser Licensing

http://www.genome-asia.ucsc.edu//license

Reset All User Settings. Obtaining a Commercial License for the Genome Browser. The Genome Browser binaries and source code are freely available for academic, nonprofit, and personal use. A license is required for commercial download and installation of most Genome Browser binaries and source code, with the exception of the items in the following directories that are freely available for all uses:. Kent/src/utils (includes big* tools). To purchase a license visit the Genome Browser store. Genome Browser ...

fifthdimension.jp fifthdimension.jp

Life is fifthdimension.::Products::Claident

https://www.fifthdimension.jp/products/claident

Claident is a software package for rapid sequence classification (clustering) and accurate taxonomic identification of host organisms of sequences for metagenomic and barcoding studies. Fast demultiplexing in parallel. Detection of erroneous and/or chimeric sequences. Clustering of tagged metagenomic amplicon sequences. Translation of nucleotide sequences into taxonomic units (DNA barcoding). Perl modules DBI, DBD: SQLite, and LWP. General Public License, version 2. For MacOS X with Xcode Command Line To...

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Kent Informatics, Inc.

Kent Informatics, Inc. is a small bioinformatics software company based in Santa Cruz, California. We provide scientists with tools to analyze the human genome, particularly, BLAT - The BLAST-like Alignment Tool. Our clients include pharmaceuticals, genomics, and bioinformatics companies. Our software is always free for universities and non-profit institutions. BLAT and Other Fine Software.

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