KIHARALAB.ORG

Kihara Bioinformatics Laboratory, Purdue University

Our research interests lie in the area of bioinformatics. We employ computational methods to elucidate intertwined relationships between protein/gene sequences, structure, function, interactions, genome, and pathways. The ultimate goal of our research projects is to obtain new, comprehensive understanding of how structures and functions are coded in molecular sequences and how functions of molecules are orchestrated in a cell. Specifically, we develop and apply novel computational methods for. EM-SURFER ...

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Daisuke Kihara

206 We●●●●●●Circle

West ●●●●●yette , Indiana, 47906

US

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dk●●●●●@gmail.com

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Daisuke Kihara

206 We●●●●●●Circle

West ●●●●●yette , Indiana, 47906

US

1.76●●●●3220

dk●●●●●@gmail.com

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Daisuke Kihara

206 We●●●●●●Circle

West ●●●●●yette , Indiana, 47906

US

1.76●●●●3220

dk●●●●●@gmail.com

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Kihara Bioinformatics Laboratory, Purdue University | kiharalab.org Reviews

<META> DESCRIPTION

Our research interests lie in the area of bioinformatics. We employ computational methods to elucidate intertwined relationships between protein/gene sequences, structure, function, interactions, genome, and pathways. The ultimate goal of our research projects is to obtain new, comprehensive understanding of how structures and functions are coded in molecular sequences and how functions of molecules are orchestrated in a cell. Specifically, we develop and apply novel computational methods for. EM-SURFER ...

<META> KEYWORDS

1 projects

2 people

3 publications

4 software

5 presentations

6 resources

7 area of research

8 dr daisuke kihara

9 principal investigator

10 research highlights

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Kihara Bioinformatics Laboratory, Purdue University | kiharalab.org Reviews

https://kiharalab.org

Our research interests lie in the area of bioinformatics. We employ computational methods to elucidate intertwined relationships between protein/gene sequences, structure, function, interactions, genome, and pathways. The ultimate goal of our research projects is to obtain new, comprehensive understanding of how structures and functions are coded in molecular sequences and how functions of molecules are orchestrated in a cell. Specifically, we develop and apply novel computational methods for. EM-SURFER ...

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kiharalab.org

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Kihara Bioinformatics Laboratory, Purdue University

http://www.kiharalab.org/presentations.php

Ishita Khan, Ph.D. thesis defense, Dept. of Computer Science, LWSN building, Room 1142, Purdue University, 1pm, July 25, 2016. Purdue University Center for Cancer Reseach Seminar Series, title TBA, November 17, 2016. The Boltzmann Sequence-Structure Channel" by A. Magner, D. Kihara, and W. Szpankowski, IEEE International Symposium in Information Theory. Barcelona, Spain, July 10-15, 2016. Ensemble-based evaluation for protein structure models" (oral presentation), ISMB. Orlando Florida,July 10-12, 2016.

2

Kihara Bioinformatics Laboratory, Purdue University

http://www.kiharalab.org/projects.php

For more detailed information, please refer to related papers published by our group (a number in a parenthesis speficies a reference in the publication page. And also our software. Which is a part of EcoliHub Project. Web-based software for fast protein comparison and surface analysis. Sequence Analysis of Intergenic Regions of Genomes. News Archives are available here. 1 postdoc position is available. Please see here. 2016 Kihara Bioinformatics Laboratory - For technical issues please contact the admin...

3

Kihara Bioinformatics Laboratory, Purdue University

http://www.kiharalab.org/news.php

Xuejiao Kang (CS) joined our lab. Welcome, Xuejiao! Lillian Liu got Best Abstract Award at Undergrad Research Poster Symposium, Purdue University on April 10! Chao Yuan defended his MS thesis. Congratulations, Chao! Dr Choi Youn Im, postdoc researcher, joined our lab. Welcome Choi! Multi-LZerD: Multiple protein docking for asymmetric complexes" by Juan Esquivel-Rodriguez and D. Kihara accepted on Proteins. Ross VerHeul (the PULSe program)started rotation. Welcome! Structure- and sequence-based function p...

4

Kihara Bioinformatics Laboratory, Purdue University

http://www.kiharalab.org/publications.php

Woong-Hee Shin, Charles Christoffer, Jibo Wang, and Daisuke Kihara. PL-PatchSurfer2: Improved local surface matching-based virtual screening method that is tolerant to target and ligand structure variation. J Chem. Inf. Model, accepted. ( 2016. Qing Wei, Joshua McGraw, Ishita K. Khan, and Daisuke Kihara. Using PFP and ESG protein function prediction webservers. Methods in Mol. Biol., accepted. ( 2016. Meghana Chitale, Ishita K. Khan, and Daisuke Kihara. Scientific Reports, in press. ( 2016. Genome-scale ...

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3D-SURFER

http://www.kiharalab.org/3d-surfer

A web-based tool for real-time protein surface comparison and analysis. Statistics of latest release (Last updated on Aug 21, 2016):. Two options of surface representation are provided. The first one is the all-atom-surface representation, and the second is the backbone-atom-surface representation, which includes alpha C (CA), C, and N atoms in the main chain. 3DZD of protein chains, domains, complexes and a combination of three above are repertoried in the website.

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bio.purdue.edu

Purdue Biological Sciences

https://www.bio.purdue.edu/Resources/pages.php

Department of Biological Sciences. Faculty Grad App Portal. Postdoctoral and Research Scientists Directory. Cell and Molecular Biology. Ecology and Evolutionary Biology. Microbiology, Immunology, and Infectious Disease. Structural, Biophysical and Computational Biology. Graduate Oral Exam Schedule. Graduate Student Web site. Biology Study Abroad Equivalencies. FERNANDEZ- JURICIC, ESTEBAN. LEUNG, YUK FAI. Purdue: Howard Hughes Medical Institute. ZeBase -an open-source database for zebrafish inventory.

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Preston Spratt :: Complete + Education

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Check : Complete Education Preston Spratt. Whether it involves raising the scores of a single class, making sense of standardized test data, or developing a curriculum for an entire school I have the experience to implement a successful program. Growing up I was exposed early and often to science. Beginning at age seven I participated in science fairs every year through my twenty first birthday. I attended numerous science and nature camps away from home. Up until my second year at Purdue. I spend a lot ...

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kiharalab.org

Kihara Bioinformatics Laboratory, Purdue University

Our research interests lie in the area of bioinformatics. We employ computational methods to elucidate intertwined relationships between protein/gene sequences, structure, function, interactions, genome, and pathways. The ultimate goal of our research projects is to obtain new, comprehensive understanding of how structures and functions are coded in molecular sequences and how functions of molecules are orchestrated in a cell. Specifically, we develop and apply novel computational methods for. EM-SURFER ...

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