kimosys.org

KiMoSys: a web-based repository of experimental data for Kinetic Models of biological Systems

Welcome to the Systems Biology web-based platform Ki. Is a freely accessible web site that combines tasks for experimental data-store, search. And tools in order to build ODE-based kinetic models. Into a single platform. It is intended to support the systems biology community when doing experimental and computational research. The future goal of Ki. Diams; Allows to use the platform freely. Diams; Public repository of published data. To ensure high accessibility. Whether or not you are an author. Diams; ...

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IDMEC - Institute of Mechanical Engineering

Rafael Costa

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Li●●oa , Lisboa, 1049-001 LISBOA

PT

351.●●●●7351

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IDMEC - Institute of Mechanical Engineering

Rafael Costa

IDMEC Instituto ●●●●●●●●●●●●●●●●anica (Polo IST)

Li●●oa , Lisboa, 1049-001 LISBOA

PT

351.●●●●7351

rc●●●●@kdbio.inesc-id.pt

View this contact

IDMEC - Institute of Mechanical Engineering

Rafael Costa

IDMEC Instituto ●●●●●●●●●●●●●●●●anica (Polo IST)

Li●●oa , Lisboa, 1049-001 LISBOA

PT

351.●●●●7351

rc●●●●@kdbio.inesc-id.pt

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KiMoSys: a web-based repository of experimental data for Kinetic Models of biological Systems | kimosys.org Reviews

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Welcome to the Systems Biology web-based platform Ki. Is a freely accessible web site that combines tasks for experimental data-store, search. And tools in order to build ODE-based kinetic models. Into a single platform. It is intended to support the systems biology community when doing experimental and computational research. The future goal of Ki. Diams; Allows to use the platform freely. Diams; Public repository of published data. To ensure high accessibility. Whether or not you are an author. Diams; ...

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KiMoSys: a web-based repository of experimental data for Kinetic Models of biological Systems | kimosys.org Reviews

https://kimosys.org

Welcome to the Systems Biology web-based platform Ki. Is a freely accessible web site that combines tasks for experimental data-store, search. And tools in order to build ODE-based kinetic models. Into a single platform. It is intended to support the systems biology community when doing experimental and computational research. The future goal of Ki. Diams; Allows to use the platform freely. Diams; Public repository of published data. To ensure high accessibility. Whether or not you are an author. Diams; ...

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kimosys.org

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KiMoSys: a web-based repository of experimental data for Kinetic Models of biological Systems

https://kimosys.org/repository/new

If you don't have an account. Click here to Register. Didn't receive confirmation instructions? Last updated: 2014-11-10 by KiMoSys team ( kimosys [at] kdbio.inesc-id.pt ). Code licensed under GNU GPL v2. And documentation under CC BY 4.0. Created using Ruby on Rails.

2

KiMoSys: a web-based repository of experimental data for Kinetic Models of biological Systems

https://kimosys.org/dynamic/tools

Based on the requirements of kinetic metabolic modeling, we identified a set of steps necessary to be followed during initial model construction, in particular, for large-scale metabolic networks. These include:. Adding automatically the initial metabolite concentrations and flux data values into rate equations according to each reaction;. Generating automatically approximated rate equations based on the stoichiometric matrix of the network. Upload SBML (.xml). See example file 1. A systems biology appro...

3

KiMoSys: a web-based repository of experimental data for Kinetic Models of biological Systems

https://kimosys.org/documentation

Site Development and Manual. 1 What is KiMoSys? 2 How to Register? 3 How do I update my KiMoSys account? 4 Who can use data and models? 5 How to search and use data and associated models? 6 What kind of data are stored in KiMoSys? 7 What submission options do I have and how to submit data? 8 How to associate models with data? 9 What file formats can I submit to the KiMoSys repository? 10 Are the uploaded data and models kept private by default? 11 Can I update my data or model after submit? Is described ...

4

KiMoSys: a web-based repository of experimental data for Kinetic Models of biological Systems

https://kimosys.org/repository

This repository makes published experimental data. Required for kinetic modeling and associated models with the data (i.e. experimental data on which the model building and/or validation are based) into publicly accessible. Centralized, to facilitate. Detailed experimental information is provided with the data. It also allows data and associated models to remain private or provides optional access to collaborators. Ki. Search/browse data and associated models from publications that are stored in Ki.

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KiMoSys: a web-based repository of experimental data for Kinetic Models of biological Systems

https://kimosys.org/links

Related External LINKS TO. Modeling tool for biochemical networks. Mathematical modeling of dynamical systems. Parameter estimation tool for SBML based models. Systems Biology toolbox for MATLAB. Standards and exchange formats. Systems Biology Markup Language. Minimum Information Requested in the Annotation of Models. Minimum Information About a Simulation Experiment. Systems Biology Graphical Notation. Simulation Experiment Description Markup Language. Kyoto Encyclopedia of Genes and Genomes.

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sels.tecnico.ulisboa.pt

Software : Welcome to Systems Engineering in Life Sciences

http://sels.tecnico.ulisboa.pt/software

Institute of Mechanical Engineering. Systems Engineering in Life Sciences. 8211; A software workflow to accelarate Genome and Transcriptome data analysis. 8211; Online app that finds the longest Open Reading Frame (ORF) from a nucleotide sequence in all 6 reading frames. 8211; software to simulate bone remodelling and therapy. 8211; A platform with a rich set of dynamic models that can be fitted to experimental time-series data. 8211; A web application for quantitative KInetic MOdels of biological SYStems.

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KiMoSys: a web-based repository of experimental data for Kinetic Models of biological Systems

Welcome to the Systems Biology web-based platform Ki. Is a freely accessible web site that combines tasks for experimental data-store, search. And tools in order to build ODE-based kinetic models. Into a single platform. It is intended to support the systems biology community when doing experimental and computational research. The future goal of Ki. Diams; Allows to use the platform freely. Diams; Public repository of published data. To ensure high accessibility. Whether or not you are an author. Diams; ...

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