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KisSplice
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KisSplice • Download
http://kissplice.prabi.fr/download
A local transcriptome assembler for SNPs, indels and AS events. Downloading KisSplice imposes the full acceptance of the CeCILL. KisSplice is written in C and Python. It works on Linux and Mac 64b systems. It also requires Python 2.7.x. Version 2.4.0-p1. Kissplice Version 2.4.0-p1. Fixed a bug that happened if the user uses the - min overlap parameter. Version 2.4.0. Kissplice Version 2.4.0. Added a timestamp to the main messages of the pipeline and a summary log file in the results folder. Added - keep-...
KisSplice • Documentation
http://kissplice.prabi.fr/tools
A local transcriptome assembler for SNPs, indels and AS events. Workflows : KisSplice post-treatments. Identifies differentially expressed variants. Returns the list of KisSplice events mapped on a reference genome, it allows to classify the types of alternative transcripts present in data and to get more information about them. Which workflow is adapted? What do I have? What I can use. I have a reference genome. I have no reference genome.
KisSplice • Contributors
http://kissplice.prabi.fr/contributors
A local transcriptome assembler for SNPs, indels and AS events. With the valuable help of Janice Kielbassa, Marie-France Sagot, David Parsons, Raluca Uricaru, Pavlos Antoniou and Gunter Roeth.
KisSplice • Galaxy
http://kissplice.prabi.fr/galaxy
A local transcriptome assembler for SNPs, indels and AS events. KisSplice wrapper for Galaxy:. If you wish to install KisSplice on the Galaxy instance of your laboratory/university/. You just have to follow step by step the instructions:. Dowload the archive containing two required files (.xml and .py) :. For KisSplice 2.2.0 version - 2014-06-12). In your Galaxy instance directory by adding these lines:. Section id="id kissplice" name="KisSplice". Then create a directory where you will put the two files:.
KisSplice • Documentation
http://kissplice.prabi.fr/documentation
A local transcriptome assembler for SNPs, indels and AS events. KisSplice 2.4.0-p1 user guide. July 1st, 2013, oral communication at Jobim 2013. May 29th, 2013 for Prabi Training Course. Journées Algorithmique de l'Assemblage" in Bordeaux, May 17, 2013. Identifying polymorphism in RNA-seq data: de Bruijn graphs and enumeration.
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KisSplice • Home
A local transcriptome assembler for SNPs, indels and AS events. 2016-12-01: kissDE version 1.4.0. 2016-07-31: Our NAR paper. Is out. Full protocol to reproduce the results is available here. 2016-04-14: KisSplice version 2.4.0-p1. 2016-01-08: KisSplice version 2.4.0. KisSplice is not a full-length transcriptome assembler. This means that it will output the variable regions of the transcripts, not reconstruct them entirely. Which type of data do I have? Which post-treatment can I use? The text of this pag...
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