labelhash.kavrakilab.org

The LabelHash Server

1DWW (EC 1.14.13.39). 7MHT (EC 2.1.1.73). 1JG1 (EC 2.1.1.77). 1KPG (EC 2.1.1.79). 1UCN (EC 2.7.4.6). 1ANI (EC 3.1.3.1). 1CZF (EC 3.2.1.15). 8TLN (EC 3.4.24.27). 1LBF (EC 4.1.1.48). 1AYL (EC 4.1.1.49). 2AHJ (EC 4.2.1.84). 1EP0 (EC 5.1.3.13). 1DID (EC 5.3.1.5). 1GGM (EC 6.1.1.14). 1B7Y (EC 6.1.1.20). 1ADY (EC 6.1.1.21). 1KP3 (EC 6.3.4.5). The output of these presets has been pre-computed and can be downloaded from the help page. Structure used for motif. Or upload a PDB file. Chain id for motif.

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The LabelHash Server | labelhash.kavrakilab.org Reviews

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1DWW (EC 1.14.13.39). 7MHT (EC 2.1.1.73). 1JG1 (EC 2.1.1.77). 1KPG (EC 2.1.1.79). 1UCN (EC 2.7.4.6). 1ANI (EC 3.1.3.1). 1CZF (EC 3.2.1.15). 8TLN (EC 3.4.24.27). 1LBF (EC 4.1.1.48). 1AYL (EC 4.1.1.49). 2AHJ (EC 4.2.1.84). 1EP0 (EC 5.1.3.13). 1DID (EC 5.3.1.5). 1GGM (EC 6.1.1.14). 1B7Y (EC 6.1.1.20). 1ADY (EC 6.1.1.21). 1KP3 (EC 6.3.4.5). The output of these presets has been pre-computed and can be downloaded from the help page. Structure used for motif. Or upload a PDB file. Chain id for motif.

<META> KEYWORDS

1 the labelhash server

2 about labelhash

3 citations

4 acknowledgements

5 license

6 release notes

7 download

8 viewmatch

9 command line

10 getting started

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The LabelHash Server | labelhash.kavrakilab.org Reviews

https://labelhash.kavrakilab.org

1DWW (EC 1.14.13.39). 7MHT (EC 2.1.1.73). 1JG1 (EC 2.1.1.77). 1KPG (EC 2.1.1.79). 1UCN (EC 2.7.4.6). 1ANI (EC 3.1.3.1). 1CZF (EC 3.2.1.15). 8TLN (EC 3.4.24.27). 1LBF (EC 4.1.1.48). 1AYL (EC 4.1.1.49). 2AHJ (EC 4.2.1.84). 1EP0 (EC 5.1.3.13). 1DID (EC 5.3.1.5). 1GGM (EC 6.1.1.14). 1B7Y (EC 6.1.1.20). 1ADY (EC 6.1.1.21). 1KP3 (EC 6.3.4.5). The output of these presets has been pre-computed and can be downloaded from the help page. Structure used for motif. Or upload a PDB file. Chain id for motif.

INTERNAL PAGES

labelhash.kavrakilab.org

1

The LabelHash Server

http://labelhash.kavrakilab.org/viewmatch.html

Whether you use the online server. Or the command line version. Of LabelHash, you will probably want to visually inspect your matches. We have developed a plugin for Chimera called ViewMatch that allows you to do just that. Below you will find detailed instructions on installing and using this plugin. Installation instructions for ViewMatch. Download and install a recent version of Chimera. To make Chimera detect the ViewMatch plugin, go to the Favorites menu and select Preferences. Select the Tools ...

2

The LabelHash Server

http://labelhash.kavrakilab.org/labelhash.html

Large-Scale Structural Motif Matching and Visualization. Motif matching can also be done through the LabelHash web server. You can use the LabelHash tools to visualize and further analyze the results. Compared to the web server, the command line tools and the Python module offer more flexibility in how the LabelHash table is constructed and how matching is performed. Created by Mark Moll. Drew H. Bryant. And Lydia E. Kavraki. Physical and Biological Computing Group. Bull; Department of Computer Science.

3

The LabelHash Server

http://labelhash.kavrakilab.org/acknowledgements.html

This project was performed pursuant to Baylor College of Medicine Grant No. DBI-054795 from the National Science Foundation. Lydia Kavraki has also been supported by a Sloan Fellowship. The computers used to carry out experiments for this project were funded by NSF CNS 0454333 and NSF CNS-0421109 in partnership with Rice University, AMD and Cray. LabelHash includes code related to proximity data structures and coordinate transformations from the OOPSMP. The PDB-to-EC mapping from PDBSProtEC. And Lydia E&...

4

The LabelHash Server

http://labelhash.kavrakilab.org/index.html

1DWW (EC 1.14.13.39). 7MHT (EC 2.1.1.73). 1JG1 (EC 2.1.1.77). 1KPG (EC 2.1.1.79). 1UCN (EC 2.7.4.6). 1ANI (EC 3.1.3.1). 1CZF (EC 3.2.1.15). 8TLN (EC 3.4.24.27). 1LBF (EC 4.1.1.48). 1AYL (EC 4.1.1.49). 2AHJ (EC 4.2.1.84). 1EP0 (EC 5.1.3.13). 1DID (EC 5.3.1.5). 1GGM (EC 6.1.1.14). 1B7Y (EC 6.1.1.20). 1ADY (EC 6.1.1.21). 1KP3 (EC 6.3.4.5). The output of these presets has been pre-computed and can be downloaded from the help page. Structure used for motif. Or upload a PDB file. Chain id for motif.

5

The LabelHash Server

http://labelhash.kavrakilab.org/license.html

RICE UNIVERSITY SOFTWARE DISTRIBUTION LICENSE. LabelHash 1.0.2 (the Software ). Created by Mark Moll, Drew H. Bryant, and Lydia E. Kavraki (the Developers ). The Software is available for download and use subject to the terms and conditions of this License. Access or use of the Software constitutes acceptance and agreement to the terms and conditions of this License. Rice and the Developers allow researchers at your Institution to copy and modify Software, for internal, non-profit research or educational...

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labelhash.kavrakilab.org

The LabelHash Server

1DWW (EC 1.14.13.39). 7MHT (EC 2.1.1.73). 1JG1 (EC 2.1.1.77). 1KPG (EC 2.1.1.79). 1UCN (EC 2.7.4.6). 1ANI (EC 3.1.3.1). 1CZF (EC 3.2.1.15). 8TLN (EC 3.4.24.27). 1LBF (EC 4.1.1.48). 1AYL (EC 4.1.1.49). 2AHJ (EC 4.2.1.84). 1EP0 (EC 5.1.3.13). 1DID (EC 5.3.1.5). 1GGM (EC 6.1.1.14). 1B7Y (EC 6.1.1.20). 1ADY (EC 6.1.1.21). 1KP3 (EC 6.3.4.5). The output of these presets has been pre-computed and can be downloaded from the help page. Structure used for motif. Or upload a PDB file. Chain id for motif.

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