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legacy.gpcr-modsim.org

GPCR-ModSim

A pipeline for computational modeling and simulation of G-protein coupled receptors (GPCRs). This server was created to allow any researcher with interest in GPCRs to obtain the most accurate structural and dynamic information for a given receptor. Here, you can generate a homology-based 3D model of your query GPCR sequence, and/or further equilibrate your GPCR structure with our all-atom Molecular Dynamics simulation protocol. If this is your first time here, please register. Afterwards you can log in.

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GPCR-ModSim | legacy.gpcr-modsim.org Reviews
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A pipeline for computational modeling and simulation of G-protein coupled receptors (GPCRs). This server was created to allow any researcher with interest in GPCRs to obtain the most accurate structural and dynamic information for a given receptor. Here, you can generate a homology-based 3D model of your query GPCR sequence, and/or further equilibrate your GPCR structure with our all-atom Molecular Dynamics simulation protocol. If this is your first time here, please register. Afterwards you can log in.
<META>
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1 projects
2 tutorial
3 welcome to gpcr modsim
4 system
5 happy gpcr modeling
6 news
7 project
8 team
9 publications
10 links
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projects,tutorial,welcome to gpcr modsim,system,happy gpcr modeling,news,project,team,publications,links,feedback
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GPCR-ModSim | legacy.gpcr-modsim.org Reviews

https://legacy.gpcr-modsim.org

A pipeline for computational modeling and simulation of G-protein coupled receptors (GPCRs). This server was created to allow any researcher with interest in GPCRs to obtain the most accurate structural and dynamic information for a given receptor. Here, you can generate a homology-based 3D model of your query GPCR sequence, and/or further equilibrate your GPCR structure with our all-atom Molecular Dynamics simulation protocol. If this is your first time here, please register. Afterwards you can log in.

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GPCR-ModSim

http://legacy.gpcr-modsim.org/qa

Do you have a question? Why are you using CLUSTAL to align? Short answer: it works like a charm. As you know, in the standard pipeline of the service we do an alignment, a number of models over that alignment, some loop refining and finally a molecular simulation. The tipical processor time consumptions of each step are:. Clustal: 0.074 seconds per alignment. Model: about 30 seconds. Loop refining: about 2 minutes per loop, depending on loop sizes. Took 0.074 seconds. Took 0.047 seconds. For 10 repetitio...

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GPCR-ModSim

http://legacy.gpcr-modsim.org/references

Here are some useful links for the GPCR researcher. This is just a brief selection, so if you feel that there is something missing that should be here please leave your suggestion at the Feedback. At the CMBI, the Netherlands. Is a collaboration between the Department of Drug Design and Pharmacology, University of Copenhagen and the CMBI, Radboud University Nijmegen. Mutant Database at the CMBI (formerly at Tromso, Norway). The GPCR Oligomerization Knowledge Base (GPCR-OKB). The Natural Variants database.

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GPCR-ModSim

http://legacy.gpcr-modsim.org/tutorials

We are on the process of upgrading the html version of the tutorial. For now please resort to the pdf version. Thanks for your patience,.

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GPCR-ModSim

http://legacy.gpcr-modsim.org/projects

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A pipeline for computational modeling and simulation of G-protein coupled receptors (GPCRs). This server was created to allow any researcher with interest in GPCRs to obtain the most accurate structural and dynamic information for a given receptor. Here, you can generate a homology-based 3D model of your query GPCR sequence, and/or further equilibrate your GPCR structure with our all-atom Molecular Dynamics simulation protocol. If this is your first time here, please register. Afterwards you can log in.

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