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Stark Lab | Factors | Home

Presentation of functional testing of transcriptional factors and cofactors by the Alexander Stark Group at the Research Institute of Molecular Pathology (IMP), Vienna

http://lego.starklab.org/

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Stark Lab | Factors | Home | lego.starklab.org Reviews

https://lego.starklab.org

Presentation of functional testing of transcriptional factors and cofactors by the Alexander Stark Group at the Research Institute of Molecular Pathology (IMP), Vienna

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1

Stark Lab | Factors | Data

http://lego.starklab.org/data

Factors @ Stark Lab. Cofactor clone validation using next-generation sequencing (NGS). NGS validations, round 1: [.BAM 440MB]. NGS validations, round 2-colony 1: [.BAM 237MB]. NGS validations, round 2-colony 2: [.BAM 175MB]. NGS validations, round 2-colony 3: [.BAM 230MB]. Assembled sequences of successful clones [.FASTA 0.5MB].

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Stark Lab | Factors | About

http://lego.starklab.org/about

Factors @ Stark Lab. Jorge Omar Yáñez Cuna. We would like to thank the core services at IMP/IMBA for excellent support without which this work would not have been possible. Especially we would like to thank:. IMP/IMBA Molecular Biology Sevices (Harald Scheuch, Robert Heinen, Zuzana Dzupinkova) for the help with sequencing, robotics, and luminescence readout,. Mark Ptashne for feedback,. IMP/IMBA IT (Georg Rath, Petar Forai) for the help in setting up this webpage. Nature, 2015. Dec 03;528(7580):147-51.

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Stark Lab | Factors | Home

http://lego.starklab.org/home

Factors @ Stark Lab. As an entry point use one of the examples below, search. For a specific protein at the bottom of the page, or perform an advanced search. Directly go to a factor (eg. Hey, FBgn0027788, or CG11194):.

4

Stark Lab | Factors | dmel:scro

http://lego.starklab.org/factor/scro

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

5

Stark Lab | Factors | dmel:bcd

http://lego.starklab.org/factor/bcd

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

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TF-DNA binding

http://www.generegulation.info/index.php/dna-protein-binding

Quantitative descriptions of gene regulation. Science 2.0 links. Journals free for authors. Protein-DNA binding: data, tools and models. Also have a look at separate lists of online tools for nucleosome positioning. Please feel free to contact me with suggestions/corrections. Analyzing ChIP seq TF data. Entries are added in the order "newest first", there is no ranking. EPosspum: Analyzes human variants to find known TF binding sites. TEC (Transcription Profiling of. Users can search either TFs that may ...

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