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At SourceForge.net, GitHub. At ResearcherID, Google Scholar. Raquo; Bioconda: a capable bio-software package manager. Raquo; A reimplementation of symmetric DUST. Raquo; A few comments on GraphMap. Raquo; My thoughts on sharing genotype and phenotype data. Raquo; A few hours with docker. Raquo; The unary representation of variants. Raquo; The problems with the VCF model. Raquo; Correcting Illumina sequencing errors: extended background. Raquo; The early history of the SAM/BAM format. Raquo; My blog.

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At SourceForge.net, GitHub. At ResearcherID, Google Scholar. Raquo; Bioconda: a capable bio-software package manager. Raquo; A reimplementation of symmetric DUST. Raquo; A few comments on GraphMap. Raquo; My thoughts on sharing genotype and phenotype data. Raquo; A few hours with docker. Raquo; The unary representation of variants. Raquo; The problems with the VCF model. Raquo; Correcting Illumina sequencing errors: extended background. Raquo; The early history of the SAM/BAM format. Raquo; My blog.
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Homepage | lh3.github.io Reviews

https://lh3.github.io

At SourceForge.net, GitHub. At ResearcherID, Google Scholar. Raquo; Bioconda: a capable bio-software package manager. Raquo; A reimplementation of symmetric DUST. Raquo; A few comments on GraphMap. Raquo; My thoughts on sharing genotype and phenotype data. Raquo; A few hours with docker. Raquo; The unary representation of variants. Raquo; The problems with the VCF model. Raquo; Correcting Illumina sequencing errors: extended background. Raquo; The early history of the SAM/BAM format. Raquo; My blog.

INTERNAL PAGES

lh3.github.io lh3.github.io
1

Pages

http://lh3.github.io/pages.html

2015 Heng Li with help from Jekyll Bootstrap.

2

My thoughts on sharing genotype and phenotype data

http://lh3.github.io/2015/06/24/my-thoughts-on-sharing-genomic-data

My thoughts on sharing genotype and phenotype data. Today, Google and Broad Institute (my employer) have announced. That they are teaming up to tackle genomic data. One sentence caught my attention: Broad Institute has either sequenced or genotyped the equivalent of more than 1.4 million biological samples . Can we get the data? Current data sharing model. Individual genotypes and phenotypes and analyze locally. A different data sharing model. Implementing the new model. SELECT v.chrom,v.pos FROM...The i...

3

Archive

http://lh3.github.io/archive.html

December 7, 2015. Raquo; Bioconda: a capable bio-software package manager. October 5, 2015. Raquo; A reimplementation of symmetric DUST. July 30, 2015. Raquo; A few comments on GraphMap. June 24, 2015. Raquo; My thoughts on sharing genotype and phenotype data. April 25, 2015. Raquo; A few hours with docker. February 23, 2015. Raquo; The unary representation of variants. February 23, 2015. Raquo; The problems with the VCF model. February 13, 2015. January 27, 2015. December 10, 2014. November 3, 2014.

4

A few hours with docker

http://lh3.github.io/2015/04/25/a-few-hours-with-docker

A few hours with docker. Installing docker on Mac. With all the buzz around docker. I finally decided to give it try. I first asked Broad sysadmins if there are machines set up for testing docker applications. They declined my request for security concerns and suggested Kitematic. For my MacBook. This means I can hardly run sequence analyses for human. Anyway, I followed their suggestion. Kitematic turns out to be easy to install. It found my pre-installed VirtualBox. I ran the busybox image. It is still...

5

On the graphical representation of sequences

http://lh3.github.io/2014/07/25/on-the-graphical-representation-of-sequences

On the graphical representation of sequences. Ever since the advent of the so-called Next-Generation Sequencing (NGS), we have been thinking about encoding all the population variations in a graph. That was 2008. Now, six years later, the rapidly growing number of sequenced human individuals continueously presses for the necessity of a graphical representation of the existing sequences, which leads to many publications in this direction, both in biology and in computer science. Ref 6 A AGA ref 6 A AGACTA...

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cbgse.tamu.edu cbgse.tamu.edu

Links - CBGSE

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The Texas A&M University System. Texas A&M AgriLife Research. Texas A&M Engineering. Texas A&M AgriLife Genomics and Bioinformatics Service. Texas A&M AgriLife's next generation sequencing and bioinformatics facility. Serving the Texas A&M system and our collaborators around the world. Texas A&M AgriLife Research. Texas A&M Engineering Experiment Station [TEES]. Texas A&M Supercomputing Facility. Texas A&M University - Department of Electrical and Computer Engineering (ECE). Texas A&M University System.

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lh3.github.io lh3.github.io

Homepage

At SourceForge.net, GitHub. At ResearcherID, Google Scholar. Raquo; Bioconda: a capable bio-software package manager. Raquo; A reimplementation of symmetric DUST. Raquo; A few comments on GraphMap. Raquo; My thoughts on sharing genotype and phenotype data. Raquo; A few hours with docker. Raquo; The unary representation of variants. Raquo; The problems with the VCF model. Raquo; Correcting Illumina sequencing errors: extended background. Raquo; The early history of the SAM/BAM format. Raquo; My blog.

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