lorentz.dynstr.pasteur.fr

Welcome to the Delarue Group at Institut Pasteur

183; In the News. 183; Older DSM web site. 183; New DSM web site. 183; UMR 3528 (CNRS). 183; NOMAD-Ref server. 183; MAP trajec server. 183; AquaSol server. 183; AquaSAXS server. 183; Job queue status. 183; Papers by theme. 183; Papers (List). 183; Older papers. 183; Google Scholar. 183; Photo du Labo. Publications by year (2006-2018). Positive and negative modulation of pentaLGICs by GAs: Cell Reports (in press) Abstract. In J Chem. Phys. Editor's pick, Feb 3, 2017. See also here. X-ray structure of Arch...

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Welcome to the Delarue Group at Institut Pasteur | lorentz.dynstr.pasteur.fr Reviews

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183; In the News. 183; Older DSM web site. 183; New DSM web site. 183; UMR 3528 (CNRS). 183; NOMAD-Ref server. 183; MAP trajec server. 183; AquaSol server. 183; AquaSAXS server. 183; Job queue status. 183; Papers by theme. 183; Papers (List). 183; Older papers. 183; Google Scholar. 183; Photo du Labo. Publications by year (2006-2018). Positive and negative modulation of pentaLGICs by GAs: Cell Reports (in press) Abstract. In J Chem. Phys. Editor's pick, Feb 3, 2017. See also here. X-ray structure of Arch...

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1 183; introduction/news

2 web servers

3 or dazzling speed

4 at 24 angstrom

5 software

6 aquasaxs

7 minactionpath map

8 nomad ref web server

9 normal mode analysis

10 normal mode refinement

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183; introduction/news,web servers,or dazzling speed,at 24 angstrom,software,aquasaxs,minactionpath map,nomad ref web server,normal mode analysis,normal mode refinement,aquasaxs web server,marc delarue

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Welcome to the Delarue Group at Institut Pasteur | lorentz.dynstr.pasteur.fr Reviews

https://lorentz.dynstr.pasteur.fr

183; In the News. 183; Older DSM web site. 183; New DSM web site. 183; UMR 3528 (CNRS). 183; NOMAD-Ref server. 183; MAP trajec server. 183; AquaSol server. 183; AquaSAXS server. 183; Job queue status. 183; Papers by theme. 183; Papers (List). 183; Older papers. 183; Google Scholar. 183; Photo du Labo. Publications by year (2006-2018). Positive and negative modulation of pentaLGICs by GAs: Cell Reports (in press) Abstract. In J Chem. Phys. Editor's pick, Feb 3, 2017. See also here. X-ray structure of Arch...

INTERNAL PAGES

lorentz.dynstr.pasteur.fr

1

Solvation & Mutation of Biological Macromolecules

http://lorentz.dynstr.pasteur.fr/pdb_hydro.php

183; Delarue web servers. 183; PDB Hydro Flow chart. 183; Modify PDB structures. 183; Fix missing side chains. 183; Flip HNQ side chains. 183; Refine sidechain torsions. 183; Single point mutations. 183; Change sequence (decorate). 183; Generate loops. 183; Solvate PDB structures. 183; Assign charges (PQR). 183; Solvate using GPBL. 183; Place Waters. 183; All in one. 183; Run AquaSol. 183; Job queue status. Pick a choice in the menu to the left and play around with it - things are still in development.

2

Welcome to the Delarue Group at Institut Pasteur

http://lorentz.dynstr.pasteur.fr/jobqueue/index_main.php

183; NOMAD-Ref server. 183; AquaSol server. 183; MAP trajec server. 183; AquaSAXS server. 183; Job queue status. 183; Recent papers. 183; Older papers. 183; Google Scholar. 183; Old DSM web site. 183; New DSM web site. 183; UMR 3528 (CNRS). 183; Photo du Labo. 183; NMA Delaunay. 183; In the News. Aug 7, 9:58. Aug 24, 20:23. There are currently no waiting jobs. Local server time is: Aug 29 2016 10:22:43. Http:/ lorentz.dynstr.pasteur.fr. Page last modified 17:40 January 24, 2006.

3

Solvation & Mutation of Biological Macromolecules

http://lorentz.dynstr.pasteur.fr/solvate_mutate.php

183; Delarue web servers. 183; PDB Hydro Flow chart. 183; Modify PDB structures. 183; Fix missing side chains. 183; Flip HNQ side chains. 183; Refine sidechain torsions. 183; Single point mutations. 183; Change sequence (decorate). 183; Generate loops. 183; Solvate PDB structures. 183; Assign charges (PQR). 183; Solvate using GPBL. 183; Place Waters. 183; All in one. 183; Run AquaSol. 183; Job queue status. Pick a choice in the menu to the left and play around with it - things are still in development.

4

NOMAD-REF - Normal Mode Analysis, Deformation and Refinement Applications

http://lorentz.dynstr.pasteur.fr/joel/index.php

183; Delarue web servers. 183; Method's Flow chart. 183; Max. Likelihood Traj. 183; Fit elastic constant. 183; ProFit Traj. job. 183; NewPath Traj. job. 183; All atoms reconstr. 183; Adenylate Kinase. 183; Examples (Table). 183; Morphing (Linear). 183; Job queue status. Generate the MAP trajectory between two known conformations. This project has been selected and is being sponsored by Apple's ARTS program. If you use the results of this web-site, please cite:. As described in this Reference. A differenc...

5

Welcome to the Delarue Group at Institut Pasteur

http://lorentz.dynstr.pasteur.fr/home/index_main.php

183; NOMAD-Ref server. 183; AquaSol server. 183; MAP trajec server. 183; AquaSAXS server. 183; Job queue status. 183; Recent papers. 183; Older papers. 183; Google Scholar. 183; Old DSM web site. 183; New DSM web site. 183; UMR 3528 (CNRS). 183; Photo du Labo. 183; NMA Delaunay. 183; In the News. Web site: his RTB code may be downloaded from here. Visit Karsten Suhre web site and his ElNemo. Web site for on-line Normal Mode calculations. For flexible fitting in EM maps. Web site and his MMTK Tools.

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lorentz.immstr.pasteur.fr

Welcome to the Delarue Group at Institut Pasteur

http://lorentz.immstr.pasteur.fr/home/index_main.php

183; NOMAD-Ref server. 183; AquaSol server. 183; MAP trajec server. 183; AquaSAXS server. 183; Job queue status. 183; Recent papers. 183; Older papers. 183; Google Scholar. 183; Old DSM web site. 183; New DSM web site. 183; UMR 3528 (CNRS). 183; Photo du Labo. 183; NMA Delaunay. 183; In the News. Web site: his RTB code may be downloaded from here. Visit Karsten Suhre web site and his ElNemo. Web site for on-line Normal Mode calculations. For flexible fitting in EM maps. Web site and his MMTK Tools.

lorentz.immstr.pasteur.fr

NOMAD-REF - Normal Mode Analysis, Deformation and Refinement Applications

http://lorentz.immstr.pasteur.fr/joel/index.php

183; Delarue web servers. 183; Method's Flow chart. 183; Max. Likelihood Traj. 183; Fit elastic constant. 183; ProFit Traj. job. 183; NewPath Traj. job. 183; All atoms reconstr. 183; Adenylate Kinase. 183; Examples (Table). 183; Morphing (Linear). 183; Job queue status. Generate the MAP trajectory between two known conformations. This project has been selected and is being sponsored by Apple's ARTS program. If you use the results of this web-site, please cite:. As described in this Reference. A differenc...

lorentz.immstr.pasteur.fr

NOMAD-REF - Normal Mode Analysis, Deformation and Refinement Applications

http://lorentz.immstr.pasteur.fr/nomad-ref.php

183; Delarue web servers. 183; Nomad Flow-chart. 183; Normal Mode calculation. 183; Examples (Movies). 183; Submit a job (from PDB file). 183; Split trajectory (for MR). 183; Generate decoys (MixMod). 183; Elastic Energy (Perturb. Anal.). 183; Overlap coefficients. 183; Submit a job. 183; Include Profit. 183; X-Ray refinement. 183; Standard refinement. 183; Screening Mol. Repl. Solns. 183; EM refinement. 183; Get Structure Factors. 183; Submit a job (no NCS). 183; Submit job with NCS. 183; Submit a job.

lorentz.immstr.pasteur.fr

Welcome to the Delarue Group at Institut Pasteur

http://lorentz.immstr.pasteur.fr/jobqueue/index_main.php

183; NOMAD-Ref server. 183; AquaSol server. 183; MAP trajec server. 183; AquaSAXS server. 183; Job queue status. 183; Recent papers. 183; Older papers. 183; Google Scholar. 183; Old DSM web site. 183; New DSM web site. 183; UMR 3528 (CNRS). 183; Photo du Labo. 183; NMA Delaunay. 183; In the News. Aug 7, 9:58. Aug 24, 20:23. There are currently no waiting jobs. Local server time is: Aug 29 2016 10:22:56. Http:/ lorentz.dynstr.pasteur.fr. Page last modified 17:40 January 24, 2006.

lorentz.immstr.pasteur.fr

Welcome to the Delarue Group at Institut Pasteur

http://lorentz.immstr.pasteur.fr/index.php

183; NOMAD-Ref server. 183; AquaSol server. 183; MAP trajec server. 183; AquaSAXS server. 183; Job queue status. 183; Recent papers. 183; Older papers. 183; Google Scholar. 183; Old DSM web site. 183; New DSM web site. 183; UMR 3528 (CNRS). 183; Photo du Labo. 183; NMA Delaunay. 183; In the News. Recent Course in Crystallography on Phasing and Model Building (Here). DNA Polymerases and DNA Repair. By L Sauguet, P. Raia, G. Henneke and M. Delarue, in press in Nature Comms. DNA polymerases and DNA Repair.

lorentz.immstr.pasteur.fr

Computing theoretical SAXS profiles of Biological Macromolecules

http://lorentz.immstr.pasteur.fr/aquasaxs.php

183; Delarue web servers. 183; SAXS profile (auto). 183; SAXS profile (expert). 183; Sequential fit. 183; Ensemble fit. 183; BioIsis test set. 183; Job queue status. This site provides tools for computing theoretical SAXS profiles with atomic models from e.g. PDB files using new methods developed recently in the lab. The major novelty, in addition to user-friendliness, is the incorporation of the solvent density generated by our new program AquaSol. Using a dipolar solvent model.

lorentz.immstr.pasteur.fr

Solvation & Mutation of Biological Macromolecules

http://lorentz.immstr.pasteur.fr/pdb_hydro.php

183; Delarue web servers. 183; PDB Hydro Flow chart. 183; Modify PDB structures. 183; Fix missing side chains. 183; Flip HNQ side chains. 183; Refine sidechain torsions. 183; Single point mutations. 183; Change sequence (decorate). 183; Generate loops. 183; Solvate PDB structures. 183; Assign charges (PQR). 183; Solvate using GPBL. 183; Place Waters. 183; All in one. 183; Run AquaSol. 183; Job queue status. Pick a choice in the menu to the left and play around with it - things are still in development.

lorentz.immstr.pasteur.fr

Welcome to the Delarue Group at Institut Pasteur

http://lorentz.immstr.pasteur.fr/references/index_main.php

183; NOMAD-Ref server. 183; AquaSol server. 183; MAP trajec server. 183; AquaSAXS server. 183; Job queue status. 183; Recent papers. 183; Older papers. 183; Google Scholar. 183; Old DSM web site. 183; New DSM web site. 183; UMR 3528 (CNRS). 183; Photo du Labo. 183; NMA Delaunay. 183; In the News. General elastic network theory. Tirion, Monique M. Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis. Phys Rev Lett, 77. Bahar I, Atilgan AR, Erman, B. Folding and Design, 1.

aria.pasteur.fr

Bip:Bip

http://aria.pasteur.fr/bip-bip

The project follows a multi-scale and multi-techniques approach for integrative structural bioinformatics:. From the structure of proteins alone to protein-ligand complexes and large multi-protein assemblies,. From isolated structures to dynamically relevant structure ensembles and. From individual proteins to whole families and entire proteomes. The project unites 13 partners in France with complementary competences:. Determination of multi-component complexes. The current partners are:. Floquet / IBMM ...

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Welcome to the Delarue Group at Institut Pasteur

183; In the News. 183; Older DSM web site. 183; New DSM web site. 183; UMR 3528 (CNRS). 183; NOMAD-Ref server. 183; MAP trajec server. 183; AquaSol server. 183; AquaSAXS server. 183; Job queue status. 183; Papers by theme. 183; Papers (List). 183; Older papers. 183; Google Scholar. 183; Photo du Labo. Publications by year (2006-2018). Positive and negative modulation of pentaLGICs by GAs: Cell Reports (in press) Abstract. In J Chem. Phys. Editor's pick, Feb 3, 2017. See also here. X-ray structure of Arch...

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lorentz.immstr.pasteur.fr

Welcome to the Delarue Group at Institut Pasteur

183; In the News. 183; Older DSM web site. 183; New DSM web site. 183; UMR 3528 (CNRS). 183; NOMAD-Ref server. 183; MAP trajec server. 183; AquaSol server. 183; AquaSAXS server. 183; Job queue status. 183; Papers by theme. 183; Papers (List). 183; Older papers. 183; Google Scholar. 183; Photo du Labo. Publications by year (2006-2018). Positive and negative modulation of pentaLGICs by GAs: Cell Reports (in press) Abstract. In J Chem. Phys. Editor's pick, Feb 3, 2017. See also here. X-ray structure of Arch...

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