main.genome-browser.bx.psu.edu
PSU Genome Browser HomePSU Genome Browser
http://main.genome-browser.bx.psu.edu/
PSU Genome Browser
http://main.genome-browser.bx.psu.edu/
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PSU Genome Browser Home | main.genome-browser.bx.psu.edu Reviews
https://main.genome-browser.bx.psu.edu
PSU Genome Browser
main.genome-browser.bx.psu.edu
UCSC Genome Bioinformatics: FAQ
http://main.genome-browser.bx.psu.edu/FAQ/FAQformat.html
Frequently Asked Questions: Data File Formats. Personal Genome SNP format. Return to FAQ Table of Contents. The first three required BED fields are:. The name of the chromosome (e.g. chr3, chrY, chr2 random) or scaffold (e.g. scaffold10671). The starting position of the feature in the chromosome or scaffold. The first base in a chromosome is numbered 0. The ending position of the feature in the chromosome or scaffold. The chromEnd. And span the bases numbered 0-99. Value will determine the level of gray ...
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CCGB | projects
http://bx.psu.edu/projects
Tasmanian Tiger Sequencing Project. Tools for manipulating biological data, particularly multiple sequence alignments. These are web browser based software tools that CCGB members have developed or contributed to. UCSC Genome Browser Mirror. Local partial mirror of the UCSC Genome Browser. Visualization tools for bacterial genome alignments. Evolutionary test of predicted exons. Genome alignment and annotation database. Metaserver for integrative analysis of genomic data. 124; Privacy and Legal Statements.
Data from the Tasmanian Devil Genome Project
http://tasmaniandevil.psu.edu/data_access/index.html
Data from the Tasmanian Devil Genome Project. Example 1: Selecting SNPs for genotyping tumors. Example 2: Widely spaced synonymous coding SNPs. Example 3: Non-synonymous coding SNPs (SAPs) found only in the tumor. Three websites provide access to the data produced by the Tasmanian devil genome project described in Miller et al. 2011. Maingenome-browser.bx.psu.edu. Tasmaniandevil.psu.edu/coding snps. The following examples illustrate these capabilities in more detail. We suggest opening the sites in a...
PhenCode: Links
http://phencode.bx.psu.edu/otherLinks.html
Alzheimer Disease and Frontotemporal Dementia Mutation Database. ALPL gene mutations database. Androgen Receptor Gene Mutations Database. Blood Group Antigen Gene Mutation Database. Osteopetrosis with renal tubular acidosis. Calcium Sensing Receptor Database. Cystic Fibrosis Mutation Database. Autosomal dominant osteopetrosis, type 2. A database of retrotransposon insertion polymorphisms in humans. Hereditary angioedema type III. FHCDB - FHC Mutation Database (no longer online).
HLab:Main - CCGB
http://wiki.bx.psu.edu/HLab:Main
Hi, the is the wiki "HOME" for Hardison Lab. Everyone is welcome to edit it. This contains our laboratory protocols and other resources. If you are a visitor and interested in the lab projects, please go this way to the Hardison lab homepage. If you are a member of this lab, you can use your login name and password to access our database: HLab:HardisonData. Or view meeting notes. Search tool for conserved motifs. An interactive Flash tool for exploring MAF alignment files. Weekly Genomics Seminar schedule.
An integrated encyclopedia of DNA elements in the human genome : Nature : Nature Research
http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html
Jump to main content. International weekly journal of science. 11 years ago: The draft human genome. The accessible chromatin landscape of the human genome. An integrated encyclopedia of DNA elements in the human genome. The ENCODE Project Consortium. Download as PDF (2,303 KB). View interactive PDF in ReadCube. ENCODE data production and initial analyses. ENCODE data integration with known genomic features. Insights into human genomic variation. Rare variants, individual genomes and somatic variants.
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main.genome-browser.bx.psu.edu
PSU Genome Browser Home
Reset All User Settings. Interactively visualize genomic data. Download data from the Genome Browser database. Get functional effect predictions for variant calls. Combine data sources from the Genome Browser database. Find genes that are similar by expression and other metrics. Convert genome coordinates between assemblies. During 2009, a mirror was started for Penn State, it included human and mouse data. Since then it has expanded to display more tracks generated at Penn State and by collaborators.
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