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Mannheimia goes programming

Sunday, June 3, 2012. Drawing heatmaps in R with heatmap.2. Data = read.table("Intensities.txt", header=T, stringsAsFactors=F) # Input the data. Data = na.omit(data) # Throw out rows with missing values. Sp A6NHR9 SMHD1 HUMAN. Sp A8CG34 P121C HUMAN. Sp O00116 ADAS HUMAN. Sp O00148 DX39A HUMAN. Sp O00257 CBX4 HUMAN. Heatmap(as.matrix(data) # The data must be in matrix format and not in frame format! Right now, we are interested in two of them the. To adjust the size of the column names and the. Although h...

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Mannheimia goes programming | mannheimiagoesprogramming.blogspot.com Reviews

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Sunday, June 3, 2012. Drawing heatmaps in R with heatmap.2. Data = read.table(Intensities.txt, header=T, stringsAsFactors=F) # Input the data. Data = na.omit(data) # Throw out rows with missing values. Sp A6NHR9 SMHD1 HUMAN. Sp A8CG34 P121C HUMAN. Sp O00116 ADAS HUMAN. Sp O00148 DX39A HUMAN. Sp O00257 CBX4 HUMAN. Heatmap(as.matrix(data) # The data must be in matrix format and not in frame format! Right now, we are interested in two of them the. To adjust the size of the column names and the. Although h...

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Mannheimia goes programming | mannheimiagoesprogramming.blogspot.com Reviews

https://mannheimiagoesprogramming.blogspot.com

Sunday, June 3, 2012. Drawing heatmaps in R with heatmap.2. Data = read.table("Intensities.txt", header=T, stringsAsFactors=F) # Input the data. Data = na.omit(data) # Throw out rows with missing values. Sp A6NHR9 SMHD1 HUMAN. Sp A8CG34 P121C HUMAN. Sp O00116 ADAS HUMAN. Sp O00148 DX39A HUMAN. Sp O00257 CBX4 HUMAN. Heatmap(as.matrix(data) # The data must be in matrix format and not in frame format! Right now, we are interested in two of them the. To adjust the size of the column names and the. Although h...

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mannheimiagoesprogramming.blogspot.com

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Mannheimia goes programming: June 2012

http://mannheimiagoesprogramming.blogspot.com/2012_06_01_archive.html

Sunday, June 3, 2012. Drawing heatmaps in R with heatmap.2. Data = read.table("Intensities.txt", header=T, stringsAsFactors=F) # Input the data. Data = na.omit(data) # Throw out rows with missing values. Sp A6NHR9 SMHD1 HUMAN. Sp A8CG34 P121C HUMAN. Sp O00116 ADAS HUMAN. Sp O00148 DX39A HUMAN. Sp O00257 CBX4 HUMAN. Heatmap(as.matrix(data) # The data must be in matrix format and not in frame format! Right now, we are interested in two of them the. To adjust the size of the column names and the. Although h...

2

Mannheimia goes programming: Agilent microarray data analysis in R

http://mannheimiagoesprogramming.blogspot.com/2012/05/agilent-microarray-data-analysis-in-r.html

Saturday, May 5, 2012. Agilent microarray data analysis in R. A month ago I started a collaboration with some researchers of my home university in Peru. They are doing some experiments with Aspergillus niger. As you may know already, R is a free statistical software that, among many other packages, has microarray packages developed by the Bioconductor group and collaborators. For the analysis of Agilent data that has been obtained from the proprietary Agilent Feature Extraction. At this point I have to m...

3

Mannheimia goes programming: May 2012

http://mannheimiagoesprogramming.blogspot.com/2012_05_01_archive.html

Sunday, May 20, 2012. Coroutines in Python: an example applied to Bioinformatics. The first post of this blog dealed with a UniProt keylist parser. Where I told you that we could mine information like the one store in the annotation field of each record with some additional scripts. Well this current post deals with it. The code presented at the bottom can actually be simpler, but my aim is to introduce a non very common Python object called coroutine. Let's see an example of David Beazley. Line = ( yield.

4

Mannheimia goes programming: A UniProt KeyList file parser in Python

http://mannheimiagoesprogramming.blogspot.com/2012/04/uniprot-keylist-file-parser-in-python.html

Monday, April 23, 2012. A UniProt KeyList file parser in Python. In this first post, I'd like to share a parser that I wrote some months ago when working with proteomics data. ID RBM47 HUMAN Reviewed; 593 AA. AC A0AV96; A0PJK2; B5MED4; Q8NI52; Q8NI53; Q9NXG3; DT 23-OCT-2007, integrated into UniProtKB/Swiss-Prot. DT 30-NOV-2010, sequence version 2. DT 18-APR-2012, entry version 46. DE RecName: Full=RNA-binding protein 47; DE AltName: Full=RNA-binding motif protein 47; GN Name=RBM47;. Self[keyword] = [] def.

5

Mannheimia goes programming: Drawing heatmaps in R with heatmap.2

http://mannheimiagoesprogramming.blogspot.com/2012/06/drawing-heatmaps-in-r-with-heatmap2.html

Sunday, June 3, 2012. Drawing heatmaps in R with heatmap.2. Data = read.table("Intensities.txt", header=T, stringsAsFactors=F) # Input the data. Data = na.omit(data) # Throw out rows with missing values. Sp A6NHR9 SMHD1 HUMAN. Sp A8CG34 P121C HUMAN. Sp O00116 ADAS HUMAN. Sp O00148 DX39A HUMAN. Sp O00257 CBX4 HUMAN. Heatmap(as.matrix(data) # The data must be in matrix format and not in frame format! Right now, we are interested in two of them the. To adjust the size of the column names and the. Although h...

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mannheimiagoesprogramming.blogspot.com

Mannheimia goes programming

Sunday, June 3, 2012. Drawing heatmaps in R with heatmap.2. Data = read.table("Intensities.txt", header=T, stringsAsFactors=F) # Input the data. Data = na.omit(data) # Throw out rows with missing values. Sp A6NHR9 SMHD1 HUMAN. Sp A8CG34 P121C HUMAN. Sp O00116 ADAS HUMAN. Sp O00148 DX39A HUMAN. Sp O00257 CBX4 HUMAN. Heatmap(as.matrix(data) # The data must be in matrix format and not in frame format! Right now, we are interested in two of them the. To adjust the size of the column names and the. Although h...

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