MARTHLAB.ORG

MarthLab · real-time genomic analysis

Gabor Marth’s computational genomics laboratory is at the USTAR Center for Genetic Discovery. In the Department of Human Genetics. At the University of Utah. And the Huntsman Cancer Institute. Diagnostic clinicians at the ARUP. Reference laboratory, we are building computational tools for medical discovery and personalized medicine. Our recent projects include the development of the popular FreeBayes. Genetic variant caller program, built as part of the 1000 Genomes Project. Methods for detecting de novo.

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MarthLab · real-time genomic analysis | marthlab.org Reviews

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Gabor Marth’s computational genomics laboratory is at the USTAR Center for Genetic Discovery. In the Department of Human Genetics. At the University of Utah. And the Huntsman Cancer Institute. Diagnostic clinicians at the ARUP. Reference laboratory, we are building computational tools for medical discovery and personalized medicine. Our recent projects include the development of the popular FreeBayes. Genetic variant caller program, built as part of the 1000 Genomes Project. Methods for detecting de novo.

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MarthLab · real-time genomic analysis | marthlab.org Reviews

https://marthlab.org

Gabor Marth’s computational genomics laboratory is at the USTAR Center for Genetic Discovery. In the Department of Human Genetics. At the University of Utah. And the Huntsman Cancer Institute. Diagnostic clinicians at the ARUP. Reference laboratory, we are building computational tools for medical discovery and personalized medicine. Our recent projects include the development of the popular FreeBayes. Genetic variant caller program, built as part of the 1000 Genomes Project. Methods for detecting de novo.

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marthlab.org

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Software · MarthLab

http://marthlab.org/software.html

Provides both a programmers API and an end-users toolkit for handling BAM files. A Bayesian genetic variant detector designed to find small polymorphisms. A tool and pipeline management system to effectively deploy tools developed in the MarthLab as well as other third-party tools. GRAPH BASED VARIANT ADJUDICATION. A graph-based tool which performs local realignment to adjudicate and validate variant calls. REFERENCE FREE VARIANT DISCOVERY. Computational Framework for reconstructing tumor clone structures.

2

Opportunities · MarthLab

http://marthlab.org/opportunities.html

Graduate students interested in completing a Ph.D. in computational biology. Graduate students will enter through the University of Utah Molecular Biology Program. We also have several postdoctoral positions available, for highly trained computational biologists with algorithmic software development experience (for our algorithm development projects), and for individuals who are interested in (and have experience with) developing web-based genomic analysis software.

3

Publications · MarthLab

http://marthlab.org/publications.html

SpeedSeq: ultra-fast personal genome analysis and interpretation. Chiang C, Layer RM, Faust GG, Lindberg MR, Rose DB, Garrison EP, Marth GT, Quinlan AR, Hall IM. 2015. Ultra fast genome analysis. Sequence Analysis and Characterization of Active Human Alu subfamilies Based on the 1000 Genomes Pilot Project. Konkel MK, Walker JA, Hotard AB, Ranck MC, Fontenot CC, Storer J, Stewart C, Marth GT; 1000 Genomes Consortium, Batzer MA. 2015. Toolbox for mobile-element insertion detection on cancer genomes. Using ...

4

People · MarthLab

http://marthlab.org/people.html

DIRECTOR OF RESEARCH AND SCIENCE. Al works on many projects, including iobio, gkno, and the Utah variation pipeline development. Andrew created and continuous to improve RUFUS, reference free variant detection methods. DIRECTOR OF RESEARCH AND SCIENCE. Chase is the project lead for IOBIO where he finds better ways of analyzing and visualizing big genomic data over the web. Gabor is the lab head, develops algorithms when he is not writing grants. SENIOR SOFTWARE DESIGN ENGINEER.

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iobio.io

Blog · iobio

http://iobio.io/blog.html

BY Alistair Ward ON Nov 3, 2016. What pathogenic variants do we know? BY Chase Miller ON Nov 2, 2016. IOBIO Now in Galaxy. Bamiobio and vcf.iobio have been integrated into galaxy. BY Alistair Ward ON Sep 22, 2016. Geneiobio version 2.1. A new version of gene.iobio is now available. BY Alistair Ward ON Sep 20, 2016. Query the origin of sequencing data. BY Alistair Ward ON Aug 3, 2016. What are bookmarks and why should I use them? BY Alistair Ward ON Jun 29, 2016. Web dev position available. Why Am I Sick?

iobio.io

Developers · iobio

http://iobio.io/developers.html

Developed in the Marth Lab by.

taxonomer.iobio.io

taxonomer.iobio Sample Datasets

http://taxonomer.iobio.io/info.html

Taxonomer is a kmer-based ultrafast metagenomics tool for assigning taxonomy to sequencing reads from both clinical and environmental samples. Taxonomer enables simultaneous microbial detection and human transcript quantification within a clinically meaningful timeframe (i.e. minutes). Taxonomer supports nucleotide and protein-based pathogen detection and phylogenetic classification using DNA and RNA sequencing data in a single integrated algorithmic framework. Taxonomer results are i...RNA-Seq data of a...

iobio.io

Applications · iobio

http://iobio.io/applications.html

These are our full applications ready for use. Improvements? A web app for investigating potential disease-causing variants. An ultra fast metagenomics classification and analysis app. An alignment data inspector tool that quickly samples bam files and visualizes a series of metrics. An variant data inspector tool that quickly samples vcf files and visualizes a series of metrics. Here are some ideas we have explored but haven't turned into full polished apps. Developed in the Marth Lab by.

bioinformatics.bc.edu

Scotty - You need more power!

http://bioinformatics.bc.edu/marthlab/scotty/scotty.php

Scotty - Power Analysis for RNA Seq Experiments. The official site for Scotty is now http:/ scotty.genetics.utah.edu/. This location however, remains functional. Scotty is a tool to assist in the designing of RNA Seq experiments that have adequate power to detect differential expression at the level required to achieve experimental aims. At the start of every experiment, someone must ask the question, "How many reads do we need to sequence? Please contact us if your require assistance. I have my own pilo...

ucgd.genetics.utah.edu

USTAR Center for Genetic Discovery » Software

http://ucgd.genetics.utah.edu/software

This page serves as an index for the applications written and distributed by the Yandell, Marth, and Quinlan labs. Each item may include links to: documentation, code, and publications. Software is listed with most recent releases first. VARPRISM (VARiant PRIoritization SuM). Annotates a VCF with any number of sorted and tabixed input BED, BAM, and VCF files in parallel. It does this by finding overlaps as it streams over the data and applying user-defined operations on the overlapping annotations. Genom...

iobio.io

About us · iobio

http://iobio.io/about.html

We are a team of developers in the Marth lab at the Center for Genetic Discovery. At the University of Utah. If you'd like to give suggestions or collaborate on an app in your research area, contact us at iobioproject at gmail dot com. Developed in the Marth Lab by.

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marthl.wordpress.com

Marthe's Blog | Just another WordPress.com weblog

Just another WordPress.com weblog. Oppsummering av skuleåret 2009/2010. 1 Sjølvvalgt prosjekt: Fotoreportasje. 2 To valfrie tekstar frå haust09: Trykkjerevulusjonen. 3 Vurdering av blogg: Vurdering av blogg. 4 Utvikling av demokrati i eit internasjonalt perspektiv: 4 mediesystem. Skape og presentere eigne medieprodukt i ulike kombinasjonar av tekst, lyd og bilde og grunngje val av medium og publiseringsform. Analysere og evaluere eigne og andre sine medieprodukt. Du kan velge å jobbe med disse sjangrene:.

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marthlab.org

MarthLab · real-time genomic analysis

Gabor Marth’s computational genomics laboratory is at the USTAR Center for Genetic Discovery. In the Department of Human Genetics. At the University of Utah. And the Huntsman Cancer Institute. Diagnostic clinicians at the ARUP. Reference laboratory, we are building computational tools for medical discovery and personalized medicine. Our recent projects include the development of the popular FreeBayes. Genetic variant caller program, built as part of the 1000 Genomes Project. Methods for detecting de novo.

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Mot de passe :. J'ai oublié mon mot de passe. Salut à tous j'espère que vous passerez une bonne visite lâchez vos commentaires. Mise à jour :. Abonne-toi à mon blog! Ajouter cette vidéo à mon blog. N'oublie pas que les propos injurieux, racistes, etc. sont interdits par les conditions générales d'utilisation de Skyrock et que tu peux être identifié par ton adresse internet (67.219.144.170) si quelqu'un porte plainte. Ou poster avec :. Posté le mercredi 07 octobre 2009 13:09. Ajouter cette vidéo à mon blog.

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Blog de marthlove909 - Blog de marthlove909 - Skyrock.com

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