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MathDAMP - Mathematica Package for Differential Analysis of Metabolite Profiles

Institute for Advanced Biosciences. Mathematica package for differential analysis of metabolite profiles. MathDAMP facilitates the visualization of differences between metabolite profiles acquired by hyphenated mass spectrometry techniques. Differences are highlighted by applying arithmetic operations to all corresponding signal intensities from whole raw (automatically preprocessed and normalized) datasets on a datapoint-by-datapoint basis. The results are visualized using density plots. More. Descripti...

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MathDAMP - Mathematica Package for Differential Analysis of Metabolite Profiles | mathdamp.iab.keio.ac.jp Reviews
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Institute for Advanced Biosciences. Mathematica package for differential analysis of metabolite profiles. MathDAMP facilitates the visualization of differences between metabolite profiles acquired by hyphenated mass spectrometry techniques. Differences are highlighted by applying arithmetic operations to all corresponding signal intensities from whole raw (automatically preprocessed and normalized) datasets on a datapoint-by-datapoint basis. The results are visualized using density plots. More. Descripti...
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6 downloads
7 tridamp
8 references
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10 mathdamp requires mathematica
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MathDAMP - Mathematica Package for Differential Analysis of Metabolite Profiles | mathdamp.iab.keio.ac.jp Reviews

https://mathdamp.iab.keio.ac.jp

Institute for Advanced Biosciences. Mathematica package for differential analysis of metabolite profiles. MathDAMP facilitates the visualization of differences between metabolite profiles acquired by hyphenated mass spectrometry techniques. Differences are highlighted by applying arithmetic operations to all corresponding signal intensities from whole raw (automatically preprocessed and normalized) datasets on a datapoint-by-datapoint basis. The results are visualized using density plots. More. Descripti...

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mathdamp.iab.keio.ac.jp mathdamp.iab.keio.ac.jp
1

MathDAMP - Examples - 04-MathDAMP-Outliers

http://mathdamp.iab.keio.ac.jp/examples/1.0.0/04-MathDAMP-Outliers

Institute for Advanced Biosciences. Mathematica package for differential analysis of metabolite profiles. This notebook provides a template for identifying outliers within a group of datasets with the Math. DAMP package. The main approaches employed are the analysis of z. Scores and the analysis of quartiles for groups of corresponding signal intensities. Additional notebooks from the Math. DAMP package ( 03-MathDAMP-TwoDatasets.nb. Demonstrates the basic functionality of the Math. First, the Math. About...

2

MathDAMP - Examples - 02-MathDAMP-Elements

http://mathdamp.iab.keio.ac.jp/examples/1.0.0/02-MathDAMP-Elements

Institute for Advanced Biosciences. Mathematica package for differential analysis of metabolite profiles. This notebook introduces the basic functionality of the Math. DAMP package. The core features of the package are described and the usage of individual functions is demonstrated with multiple options. For examples of performing common types of differential analysis of metabolite profiles, please refer to the notebooks: 03-MathDAMP-TwoDatasets.nb. First, the Math. DAMP files to the. In this notebook, m...

3

MathDAMP - Downloads

http://mathdamp.iab.keio.ac.jp/downloads

Institute for Advanced Biosciences. Mathematica package for differential analysis of metabolite profiles. MathDAMP package file along with example notebooks and sample datasets. By downloading the package you agree to MathDAMP Terms of Usage. Institute for Advanced Biosciences.

4

MathDAMP - Examples - 06-MathDAMP-MultipleGroups

http://mathdamp.iab.keio.ac.jp/examples/1.0.0/06-MathDAMP-MultipleGroups

Institute for Advanced Biosciences. Mathematica package for differential analysis of metabolite profiles. This notebook provides a template for the comparison of multiple groups of replicate datasets with the Math. DAMP package. F ratio (one-way ANOVA) is calculated for corresponding signal intensities from the normalized datasets to locate the differences among the groups. Additional notebooks from the Math. DAMP package ( 03-MathDAMP-TwoDatasets.nb. Demonstrates the basic functionality of the Math.

5

MathDAMP - Examples - 03-MathDAMP-TwoDatasets

http://mathdamp.iab.keio.ac.jp/examples/1.0.0/03-MathDAMP-TwoDatasets

Institute for Advanced Biosciences. Mathematica package for differential analysis of metabolite profiles. The preceding notebook 02-MathDAMP-Elements.nb. Introduced the basic functionality of the Math. DAMP package. The core functionality was demonstrated on a comparison of two datasets. This notebook provides a template for such comparison, the core functions are however wrapped into the DAMPTwoDatasets. Additional notebooks from the Math. DAMP package ( 04-MathDAMP-Outliers.nb. First, the Math. Functio...

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MathDAMP - Mathematica Package for Differential Analysis of Metabolite Profiles

Institute for Advanced Biosciences. Mathematica package for differential analysis of metabolite profiles. MathDAMP facilitates the visualization of differences between metabolite profiles acquired by hyphenated mass spectrometry techniques. Differences are highlighted by applying arithmetic operations to all corresponding signal intensities from whole raw (automatically preprocessed and normalized) datasets on a datapoint-by-datapoint basis. The results are visualized using density plots. More. Descripti...

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