mattshirley.com

Mattshirley.com · an n=1 experiment

My name is Matt Shirley and I work as an Investigator in Oncology Bioinformatics at Novartis Institutes for BioMedical Research. You can find my publications on ORCID. And read my reviews on Publons. View the impact of my research products on ImpactStory. Send me a pull request on GitHub. Ask me about bioinformatics on BioStars.org. Or ask me a general question on Quora. Network with me on LinkedIn. Building a 1000 watt mid-drive electric full-suspension folding bike. Matthew Shirley, Ph.D. Mining intern...

http://www.mattshirley.com/

OVERVIEW OF mattshirley.com

TRAFFIC RANK

>1,000,000

REVIEWS

0

PAGES IN THIS WEBSITE

7

LINKS TO THIS WEBSITE

CONTACTS

ADDRESSES

SOCIAL LINKS

ONLINE SINCE

WEBSITE DETAILS

SEO

PAGES

SIMILAR SITES

TRAFFIC RANK FOR MATTSHIRLEY.COM

TODAY'S RATING

>1,000,000

TRAFFIC RANK - AVERAGE PER MONTH

BEST MONTH

December

AVERAGE PER DAY Of THE WEEK

HIGHEST TRAFFIC ON

Friday

TRAFFIC BY CITY

Sign up

CUSTOMER REVIEWS

Average Rating: 3.8 out of 5 with 14 reviews

5 star

4

4 star

5

3 star

4

2 star

0

1 star

1

Hey there! Start your review of mattshirley.com

AVERAGE USER RATING

Write a Review

WEBSITE PREVIEW

LOAD TIME

0.8 seconds

FAVICON PREVIEW

16x16
32x32
64x64
128x128
160x160
192x192
256x256

CONTACTS AT MATTSHIRLEY.COM

Whois Privacy Protection Service, Inc.

Whois Agent

PO ●●●639

Kir●●●and , WA, 98083

US

1.42●●●●0657

1.42●●●●4730

ma●●●●●●●●●●●●●@protecteddomainservices.com

View this contact

Whois Privacy Protection Service, Inc.

Whois Agent

PO ●●●639

Kir●●●and , WA, 98083

US

1.42●●●●0657

1.42●●●●4730

ma●●●●●●●●●●●●●@protecteddomainservices.com

View this contact

Whois Privacy Protection Service, Inc.

Whois Agent

PO ●●●639

Kir●●●and , WA, 98083

US

1.42●●●●0657

1.42●●●●4730

ma●●●●●●●●●●●●●@protecteddomainservices.com

View this contact

ADD CONTACT

Login

TO VIEW CONTACTS

Remove Contacts

FOR PRIVACY ISSUES

DOMAIN REGISTRATION INFORMATION

REGISTERED: 2011 May 22
UPDATED: 2014 April 29
EXPIRATION: EXPIRED REGISTER THIS DOMAIN

BUY YOUR DOMAIN

DOMAIN AGE

14

YEARS
0

MONTHS
26

DAYS

NAME SERVERS

1: ns1.digitalocean.com
2: ns2.digitalocean.com
3: ns3.digitalocean.com

REGISTRAR

NAME.COM, INC.

WHOIS : whois.name.com

REFERRED : http://www.name.com

CONTENT

PAGES IN
THIS WEBSITE

7

SSL

EXTERNAL LINKS

15

SITE IP

192.241.182.170

LOAD TIME

0.778 sec

SCORE

6.2

PAGE TITLE

Mattshirley.com · an n=1 experiment | mattshirley.com Reviews

<META> DESCRIPTION

My name is Matt Shirley and I work as an Investigator in Oncology Bioinformatics at Novartis Institutes for BioMedical Research. You can find my publications on ORCID. And read my reviews on Publons. View the impact of my research products on ImpactStory. Send me a pull request on GitHub. Ask me about bioinformatics on BioStars.org. Or ask me a general question on Quora. Network with me on LinkedIn. Building a 1000 watt mid-drive electric full-suspension folding bike. Matthew Shirley, Ph.D. Mining intern...

<META> KEYWORDS

1 and scholar

2 or twitter

3 github repositories

4 tldr python client

5 pyfaidx

6 fastqp

7 pevsner lab

8 hamstring

9 snp flip

10 dotfiles

CONTENT

Page content here

KEYWORDS ON PAGE

and scholar,or twitter,github repositories,tldr python client,pyfaidx,fastqp,pevsner lab,hamstring,snp flip,dotfiles,simplesam,biochopkins,strandex,galaxy json data source,posts,latest post,more posts,tweets by @mdshw5,250 massachussetts ave,education

SERVER

Apache/2.4.10 (Debian)

CONTENT-TYPE

utf-8

GOOGLE PREVIEW

Mattshirley.com · an n=1 experiment | mattshirley.com Reviews

https://mattshirley.com

My name is Matt Shirley and I work as an Investigator in Oncology Bioinformatics at Novartis Institutes for BioMedical Research. You can find my publications on ORCID. And read my reviews on Publons. View the impact of my research products on ImpactStory. Send me a pull request on GitHub. Ask me about bioinformatics on BioStars.org. Or ask me a general question on Quora. Network with me on LinkedIn. Building a 1000 watt mid-drive electric full-suspension folding bike. Matthew Shirley, Ph.D. Mining intern...

SUBDOMAINS

tripod.mattshirley.com

triPOD: Sensitive detection of chromosomal abnormalities in parent-child trio-based microarray data

Sensitive detection of chromosomal abnormalities in parent-child trio-based microarray data. This software program detects chromosomal abnormalities in parent-child trio-based microarray data. It has been shown to provide improved sensitivity for abnormality detection, with substantial improvement in detection of low-level mosaic abnormalities, as described in Joseph D. Baugher, Benjamin D. Baugher, Matthew D. Shirley, and Jonathan Pevsner. Sensitive and specific detection of mosaic c...

INTERNAL PAGES

mattshirley.com

1

Reading, processing, and writing high throughput sequencing data

http://www.mattshirley.com/uploads/2013/04/lecture12-notes.html

Reading, processing, and writing high throughput sequencing data. Matt Shirley (matt.shirley@jhmi.edu). Only half of the class expressed an interest in using Python for sequence analysis. Why should I care? High throughput sequence is. Your data of interest might also be mostly strings. It's what your instructor knows best. Except with quality scores for each base call. Strand ( /-) and optional read name. These quality scores are encoded as ASCII (American Standard Code for Information Interchange).

2

Mattshirley.com · an n=1 experiment

http://www.mattshirley.com/posts

My name is Matt Shirley and I work as an Investigator in Oncology Bioinformatics at Novartis Institutes for BioMedical Research. You can find my publications on ORCID. View the impact of my research products on ImpactStory. Send me a pull request on GitHub. Ask me about bioinformatics on BioStars.org. Or ask me a general question on Quora. Network with me on LinkedIn. Too if you like. Masking low-complexity regions using pyfaidx MutableFastaRecord. A Belated Introduction to pyfaidx.

3

working_with_pandas slides

http://www.mattshirley.com/uploads/2014/05/working_with_pandas.slides.html

Python data analysis library. Pandas Series and Dataframe. Reading data from CSV. Using Pandas to plot your data. Pandas provides tools for:. Simple regression of data. Data in Pandas are organized in table-like structures. Pandas is built on Numpy as a datastructure backend. Pandas allows creation of indexed two-dimensional arrays. Object in R language. Basic building block is a. Dictionary-like object with an index. Objects are combined as columns to produce a. Is an indexed, named two-dimensional array.

4

Mattshirley.com · an n=1 experiment

http://www.mattshirley.com/masking-lcr-with-pyfaidx

My name is Matt Shirley and I work as an Investigator in Oncology Bioinformatics at Novartis Institutes for BioMedical Research. You can find my publications on ORCID. View the impact of my research products on ImpactStory. Send me a pull request on GitHub. Ask me about bioinformatics on BioStars.org. Or ask me a general question on Quora. Network with me on LinkedIn. Too if you like. Masking low-complexity regions using pyfaidx MutableFastaRecord. Using this bed file, the GRCv37. Human reference genome,...

5

Spoon-Fed R

http://www.mattshirley.com/uploads/2013/10/Spoon-fed_R.html

Using R as a calculator. Basic stats in R. Reading and writing delimited data. Plotting with base R graphics. Loading and installing packages. At your command-line shell:. R version 3.0.2 - Frisbee Sailing Platform: x86 64-apple-darwin13.0.0 (64-bit) . Type q() to quit R. Is your prompt for entering commands. I will omit the carat for the rest of the presentation. Download from http:/ www.rstudio.com/. RStudio is an integrated development environment including:. Interpreter with code completion. Remove e...

UPGRADE TO PREMIUM TO VIEW 2 MORE

TOTAL PAGES IN THIS WEBSITE

7

LINKS TO THIS WEBSITE

bioinfbook.org

Welcome To The Pevsner Laboratory | The Pevsner Lab

http://www.bioinfbook.org/php

Skip to main content. Bioinformatics and Functional Genomics (textbook). Autism and Rett Syndrome. Gene Expression in Human Disease. The Kennedy Krieger Institute. Welcome To The Pevsner Laboratory. Welcome to the laboratory of Jonathan Pevsner. Our lab studies the genetic basis of childhood brain disorders. We are located at the Kennedy Krieger Institute. NEWS (August 14, 2016): I have been named Chief Scientific Officer of the Sturge-Weber Foundation. You can read the SWF announcement here. NEWS (June ...

pevsnerlab.kennedykrieger.org

Welcome To The Pevsner Laboratory | The Pevsner Lab

http://pevsnerlab.kennedykrieger.org/php/node/2

Skip to main content. Bioinformatics and Functional Genomics (textbook). Autism and Rett Syndrome. Gene Expression in Human Disease. The Kennedy Krieger Institute. Welcome To The Pevsner Laboratory. Welcome to the laboratory of Jonathan Pevsner. Our lab studies the genetic basis of childhood brain disorders. We are located at the Kennedy Krieger Institute. NEWS (August 14, 2016): I have been named Chief Scientific Officer of the Sturge-Weber Foundation. You can read the SWF announcement here. NEWS (June ...

pevsnerlab.kennedykrieger.org

Welcome To The Pevsner Laboratory | The Pevsner Lab

http://pevsnerlab.kennedykrieger.org/php

Skip to main content. Bioinformatics and Functional Genomics (textbook). Autism and Rett Syndrome. Gene Expression in Human Disease. The Kennedy Krieger Institute. Welcome To The Pevsner Laboratory. Welcome to the laboratory of Jonathan Pevsner. Our lab studies the genetic basis of childhood brain disorders. We are located at the Kennedy Krieger Institute. NEWS (August 14, 2016): I have been named Chief Scientific Officer of the Sturge-Weber Foundation. You can read the SWF announcement here. NEWS (June ...

chriscoletta.com

BIOF309 Course website

http://chriscoletta.com/biof309

Anatoly Dryga / anatoly.dryga@nih.gov. Ben Busby / ben.busby@gmail.com.

hddb.org

Welcome To The Pevsner Laboratory | The Pevsner Lab

http://www.hddb.org/php

Skip to main content. Bioinformatics and Functional Genomics (textbook). Autism and Rett Syndrome. Gene Expression in Human Disease. The Kennedy Krieger Institute. Welcome To The Pevsner Laboratory. Welcome to the laboratory of Jonathan Pevsner. Our lab studies the genetic basis of childhood brain disorders. We are located at the Kennedy Krieger Institute. NEWS (August 14, 2016): I have been named Chief Scientific Officer of the Sturge-Weber Foundation. You can read the SWF announcement here. NEWS (June ...

hddb.org

Welcome To The Pevsner Laboratory | The Pevsner Lab

http://www.hddb.org/php/node/2

Skip to main content. Bioinformatics and Functional Genomics (textbook). Autism and Rett Syndrome. Gene Expression in Human Disease. The Kennedy Krieger Institute. Welcome To The Pevsner Laboratory. Welcome to the laboratory of Jonathan Pevsner. Our lab studies the genetic basis of childhood brain disorders. We are located at the Kennedy Krieger Institute. NEWS (August 14, 2016): I have been named Chief Scientific Officer of the Sturge-Weber Foundation. You can read the SWF announcement here. NEWS (June ...

etalog.blogspot.com

etalog: October 2014

http://etalog.blogspot.com/2014_10_01_archive.html

More of a comment than a question. Friday, October 3, 2014. On the awesomeness of the BOSC/OpenBio Codefest 2014. This summer I was in Boston for a bundle of conferences: Intelligent Systems in Molecular Biology (ISMB). The Bioinformatics Open Source Conference (BOSC). Before that, and a very special Open Bioinformatics Codefest. Before all of it. The Codefest was novel, so I'm writing about the highlights here. A Galaxy Tool for CNVkit. I spent a good portion of the last year developing CNVkit. In addit...

etalog.blogspot.com

etalog: On the awesomeness of the BOSC/OpenBio Codefest 2014

http://etalog.blogspot.com/2014/10/on-awesomeness-of-boscopenbio-codefest.html

More of a comment than a question. Friday, October 3, 2014. On the awesomeness of the BOSC/OpenBio Codefest 2014. This summer I was in Boston for a bundle of conferences: Intelligent Systems in Molecular Biology (ISMB). The Bioinformatics Open Source Conference (BOSC). Before that, and a very special Open Bioinformatics Codefest. Before all of it. The Codefest was novel, so I'm writing about the highlights here. A Galaxy Tool for CNVkit. I spent a good portion of the last year developing CNVkit. In addit...

UPGRADE TO PREMIUM TO VIEW 7 MORE

TOTAL LINKS TO THIS WEBSITE

15

SOCIAL ENGAGEMENT

mdshw5

OTHER SITES

mattshirey.info

Home | Matt Shirey Resume

You have installed Grav. You have installed the Base Grav Package. That provides a simple page. And the default antimatter. Theme to get you started. If you want a more full-featured. Base install, you should check out Skeleton. Packages available in the downloads. Find out all about Grav. By checking out our dedicated Learn Grav. As well as other Grav skeleton. Packages from the Grav Downloads. Check out our Grav Development Blog. To find out the latest goings on in the Grav-verse. Folder and open the.

mattshirilla.blogspot.com

>gearhead recursion

160; gearhead recursion. 160; A blog by Matt Shirilla. Sunday, July 5, 2015. Google App Engine Java Tutorial. Google App Engine is easy to get started with using the Java tutorial. It's really easy to follow along with, especially if you are used to jsp/servlets. The cool thing is that the tutorial uses Objectify. So you can learn a little about persistence APIs along the way. I used this tutorial. To get started using Google Cloud Endpoints for adding a REST API. SET PATH="%JAVA HOME% bin". I look at...

mattshirk.com

Matthew Shirk

Please enter password to enter. If your password has changed or is expired, please email Shirkmatt3@gmail.com.

mattshirkpublicdefender.com

Matt Shirk Public Defender

4 Constructive Ways on How to Talk About Politics. October 1, 2017. Whether we like it or not everywhere we go, people are always discussing politics. As everyone has their own set of opinions on the matter. If you want to overcome poor progress in discussions, it is useful to move from arguing to sharing facts that you are concerned about. Spark up the conversation respectfully. If you want to spark up a political conversation in a productive way, aim to listen more. For many of us, we are solely in...

mattshirley.blogspot.com

The Vagablog.

Thursday, July 30, 2009. The Top Ten Worst Possible 'Roids Reveals. Ortiz is out. It's done. Here's the worst-case scenarios for me:. You know, I was listed on that '03 steroids list. Look at how my weight ballooned:. Anyway, I think the top ten I'm-never-believing-in-baseball-again steroids list would be as follows:. 1: Hall of Famers from the last five years - Specifically Ripken and Rickey, although at this point, I don't even want to look at their career numbers and think about it. 7: Jeter - As a ki...

mattshirley.com

Mattshirley.com · an n=1 experiment

My name is Matt Shirley and I work as an Investigator in Oncology Bioinformatics at Novartis Institutes for BioMedical Research. You can find my publications on ORCID. And read my reviews on Publons. View the impact of my research products on ImpactStory. Send me a pull request on GitHub. Ask me about bioinformatics on BioStars.org. Or ask me a general question on Quora. Network with me on LinkedIn. Building a 1000 watt mid-drive electric full-suspension folding bike. Matthew Shirley, Ph.D. Mining intern...

mattshirley.tripod.com

The Frameset

This page shows two frames. Without a frames-capable browser, you won't be able to see the page.

mattshirts.com

Mattshirts.com

This domain may be for sale. Backorder this Domain. This Domain Name Has Expired - Renewal Instructions.

mattshive.com

m@ and Trace's blog

mattshlian.blogspot.com

MATTSHLIAN.COM

Monday, August 12, 2013. I'm going to be posting future updates here. From now on. Keeping up with a blog, facebook, twitter and a 3 month old baby is too much. Just finished this piece for Swire Properties:. The piece is 36 x 54 x 6 in. Thea shot all the pics. Monday, June 3, 2013. Paperworks at the Berkshire Museum. I have a few pieces at the Berkshire Museum in June. Opening June 15, 2013. Berkshire Museum presents PaperWorks: The Art and Science of an Extraordinary Material. From 5:30 to 7:30 pm.