mckuhn.de
mckuhn.deMichael Kuhn: research staff scientist at EMBL Heidelberg in bioinformatics
http://www.mckuhn.de/
Michael Kuhn: research staff scientist at EMBL Heidelberg in bioinformatics
http://www.mckuhn.de/
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mckuhn.de | mckuhn.de Reviews
https://mckuhn.de
Michael Kuhn: research staff scientist at EMBL Heidelberg in bioinformatics
bioCS
Biology as computational science. Tuesday, June 14, 2016. My knitr LaTeX template: manuscript and supplement interleaved in one source file. Most of the time between starting manuscript and having it accepted after peer-review is spent writing, re-writing and re-arranging content. In Word, keeping track of figure numbers is a big pain, even more so when figures are moved between the main manuscript and the supplement. Moving my Word manuscript to knitr. I first had to decide between RMarkdown and LaTeX.
News about the STRING and STITCH databases: STRING 8.2 and STITCH 2.0 released
http://string-stitch.blogspot.com/2009/11/string-82-and-stitch-20-released.html
News about the STRING and STITCH databases. Monday, November 9, 2009. STRING 8.2 and STITCH 2.0 released. We have released new versions of STRING and STITCH! Here are some of the changes:. Protein-protein actions like binding. Most download files are now under Creative Commons licenses, so academics usually don't need to fill license agreements anymore. Bugfix: version 8.1 had accidentally omitted homology transfer in the textmining channel, this is now fixed. Posted by Michael Kuhn. Ive been looking at ...
News about the STRING and STITCH databases: 100 API accesses per minute: not a good idea
http://string-stitch.blogspot.com/2009/07/100-api-accesses-per-minute-not-good.html
News about the STRING and STITCH databases. Wednesday, July 1, 2009. 100 API accesses per minute: not a good idea. STRING was unreachable for some time this morning while it was busy processing 10,000 API requests in about 1.5 hours. 100 API accesses per minute is not. A good idea, as this overloads our server, making STRING (and STITCH) unavailable for everyone. Don't run scripts that access the API in parallel. Posted by Michael Kuhn. Subscribe to: Post Comments (Atom). This work is licensed under a.
News about the STRING and STITCH databases: July 2009
http://string-stitch.blogspot.com/2009_07_01_archive.html
News about the STRING and STITCH databases. Thursday, July 23, 2009. Quick poll for next STITCH version concerning chemical names. I'm conducting a small poll over at FriendFeed. About abbreviations of chemical names. If you have a opinion about which abbreviation is better in the following cases, please leave your feedback (either on FriendFeed or in the comments here):. 10-formyltetrahydrofolate: "10-formyltetra." or "10-formyl-THF"? Acetyl-L-carnitine: "acetyl-L-carni." or "ALCAR"? Allows (e.g....
News about the STRING and STITCH databases: Known Issues in STRING version 8.0
http://string-stitch.blogspot.com/2009/02/known-issues-in-string-version-80.html
News about the STRING and STITCH databases. Thursday, February 19, 2009. Known Issues in STRING version 8.0. For each STRING version so far, only when we released it to the users did we find the last remaining bugs. Users often email us with their problems, and sometimes we are indeed to blame because there is an error. This is good (we think), because each bug found is a bug fixed - albeit only in the next release, usually. So far, this is what we have found in release 8.0:. Brucella ovis ATCC 25840.
News about the STRING and STITCH databases: June 2009
http://string-stitch.blogspot.com/2009_06_01_archive.html
News about the STRING and STITCH databases. Wednesday, June 24, 2009. New Release of STRING: Version 8.1. We are happy to announce that STRING 8.1 has just been released. We have updated the interaction data, fixed a number of bugs and greatly improved the web interface. As always, we keep older versions around to guarantee reproducibility of earlier work (see here. The proteins in the network can now also be clustered, 'live', via two different methods: k-means. And markov chain clustering. Such as miss...
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mckuhn.de
This is the homepage of Michael Kuhn (né Müller). I am from Leipzig and/or Dresden and lived in Pasadena, CA, for three years while studying at Caltech. I did my PhD in the lab of Peer Bork. At the EMBL Heidelberg. Working on integrating protein-chemical interactions. To predict drug targets. And to find the molecular basis of side effects. Between 2009 and 2016, I worked as a post doc in the labs of Andreas Beyer. First Biotec, TU Dresden, now University of Cologne), Tony Hyman. BioCS, a blog. However, ...
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