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Quantitative Biosciences Institute (formerly the UCSF Molecular Design Institute) | mdi.ucsf.edu Reviews
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Quantitative Biosciences Institute (formerly the UCSF Molecular Design Institute)
https://mdi.ucsf.edu/events.html
The UCSF Molecular Design Institute (MDI), a University of California. Organized Research Unit at UC San Francisco. Has been renamed the Quantitative Biosciences Institute (QBI). As of January 2016. QBI remains an ORU. It is directed by Nevan Krogan, PhD. Who in this role reports to B. Joseph Guglielmo, PharmD. Dean of the UCSF School of Pharmacy. Please send inquiries to QBI Director Krogan at Nevan.Krogan@ucsf.edu.
Quantitative Biosciences Institute (formerly the UCSF Molecular Design Institute)
https://mdi.ucsf.edu/sitemap.html
The UCSF Molecular Design Institute (MDI), a University of California. Organized Research Unit at UC San Francisco. Has been renamed the Quantitative Biosciences Institute (QBI). As of January 2016. QBI remains an ORU. It is directed by Nevan Krogan, PhD. Who in this role reports to B. Joseph Guglielmo, PharmD. Dean of the UCSF School of Pharmacy. Please send inquiries to QBI Director Krogan at Nevan.Krogan@ucsf.edu.
Quantitative Biosciences Institute (formerly the UCSF Molecular Design Institute)
https://mdi.ucsf.edu/software.html
The UCSF Molecular Design Institute (MDI), a University of California. Organized Research Unit at UC San Francisco. Has been renamed the Quantitative Biosciences Institute (QBI). As of January 2016. QBI remains an ORU. It is directed by Nevan Krogan, PhD. Who in this role reports to B. Joseph Guglielmo, PharmD. Dean of the UCSF School of Pharmacy. Please send inquiries to QBI Director Krogan at Nevan.Krogan@ucsf.edu.
Quantitative Biosciences Institute (formerly the UCSF Molecular Design Institute)
https://mdi.ucsf.edu/CSP.html
The UCSF Molecular Design Institute (MDI), a University of California. Organized Research Unit at UC San Francisco. Has been renamed the Quantitative Biosciences Institute (QBI). As of January 2016. QBI remains an ORU. It is directed by Nevan Krogan, PhD. Who in this role reports to B. Joseph Guglielmo, PharmD. Dean of the UCSF School of Pharmacy. Please send inquiries to QBI Director Krogan at Nevan.Krogan@ucsf.edu.
Quantitative Biosciences Institute (formerly the UCSF Molecular Design Institute)
https://mdi.ucsf.edu/faculty.html
The UCSF Molecular Design Institute (MDI), a University of California. Organized Research Unit at UC San Francisco. Has been renamed the Quantitative Biosciences Institute (QBI). As of January 2016. QBI remains an ORU. It is directed by Nevan Krogan, PhD. Who in this role reports to B. Joseph Guglielmo, PharmD. Dean of the UCSF School of Pharmacy. Please send inquiries to QBI Director Krogan at Nevan.Krogan@ucsf.edu.
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DOCK Links
http://dock.compbio.ucsf.edu/DOCK_Links/index.htm
The Official UCSF DOCK Web-site. Older Versions of DOCK. Links Related to DOCKing. Library required to compile MPI function. Linux-like environment required to run Windows version of DOCK. Fortran compiler required to run accessory programs on MacIntosh. Computes molecular surface of molecule. Interconverts a number of file formats currently used in molecular modeling. Visualization and computation of chemical properties. Visualization and computation of chemical properties. U Mass, Amherst.
UCSF DOCK 6
http://dock.compbio.ucsf.edu/DOCK_6/index.htm
The Official UCSF DOCK Web-site. Older Versions of DOCK. DOCK 6 is written in C and is functionally separated into independent components, allowing a high degree of program flexibility. Accessory programs are written in C and Fortran 77. We provide source code for all programs. The DOCK suite of programs requires on the order of 100 MB of disk space and 48 MB RAM. And molecular dynamics simulation capabilities. Because DOCK 6 is an extension of DOCK 5, it also includes all previous features.
UCSF DOCK 3.7
http://dock.compbio.ucsf.edu/DOCK3.7
The Official UCSF DOCK Web-site. Older Versions of DOCK. Is written in Fortran (and some C); it is an update of DOCK 3.6. With many improved features. It uses new Flexibase/DB2 files found on ZINC. If you use DOCK3.7, please cite the following paper: Coleman, Carchia, Sterling, Irwin and Shoichet. PLOS ONE 2013. Highlights of new features:. New mol2 output with full atom typing and bond information. Improved sampling algorithm with better control of sampling. Multiple ligand pose output.
Robert Fletterick, Ph
http://www.msg.ucsf.edu/flett/index.html
Protein Structure and Function. Macromolecular Structure Group,. University of California San Francisco ( UCSF). Department of Biochemistry and Biophysics. Department of Cellular and Molecular Pharmacology. Program In Biological Sciences. Chemistry and Chemical Biology. California Institute for Quantitative Biosciences QB 3. Institute for Neurodegenerative Diseases. The Fletterick lab is in Genentech Hall at UCSF' s Mission Bay. The ADVANCED LIGHT SOURCE, LBNL. Http:/ www.msg.ucsf.edu/flett.
UCSF DOCK 3.6
http://dock.compbio.ucsf.edu/DOCK3.6
The Official UCSF DOCK Web-site. Older Versions of DOCK. Is written in Fortran (and some C); it is an update of DOCK 3.5.54. With many improved features. It maintains compatibility with Flexibase/DB files found on ZINC. Highlights of new features:. Ligand Desolvation as described in Mysinger MM, Shoichet BK. Rapid context-dependent ligand desolvation in molecular docking. J Chem Inf Model. 2010 Sep 27; 50(9):1561-73. 300 to 500% speedup. 32bit and 64bit versions. Ligand build problems fixed ( mol2db.
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Quantitative Biosciences Institute (formerly the UCSF Molecular Design Institute)
The UCSF Molecular Design Institute (MDI), a University of California. Organized Research Unit at UC San Francisco. Has been renamed the Quantitative Biosciences Institute (QBI). As of January 2016. QBI remains an ORU. It is directed by Nevan Krogan, PhD. Who in this role reports to B. Joseph Guglielmo, PharmD. Dean of the UCSF School of Pharmacy. Please send inquiries to QBI Director Krogan at Nevan.Krogan@ucsf.edu.
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