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Integrated queryable database for Drosophila and Anopheles genomics

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MedicMine: Home | medicmine.jcvi.org Reviews
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Integrated queryable database for Drosophila and Anopheles genomics
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MedicMine: Home | medicmine.jcvi.org Reviews

https://medicmine.jcvi.org

Integrated queryable database for Drosophila and Anopheles genomics

INTERNAL PAGES

medicmine.jcvi.org medicmine.jcvi.org
1

MedicMine: Home

http://medicmine.jcvi.org/medicmine/mymine.do

Updated on Sep-16-2016 (v1.2.0, Mt4.0v2. Search MedicMine. Enter names. For genes, proteins, pathways, ontology terms, authors, etc. (e.g. Medtr2g036650, plasma membrane, sucrose synthase). Eg Medtr1g088775, Medtr2g008430, Medtr2g042330, Medtr3g084500, Medtr4g092620, Medtr5g022700, Medtr6g033260, Medtr7g072350, Medtr7g075090, Medtr7g083920, Medtr7g100345, Medtr8g028145, Medtr8g036020, Medtr8g036035, Medtr8g036040, Medtr8g036050, Medtr8g083210, Medtr8g105860. MedicMine integrates many types of data for.

2

MedicMine: Home

http://medicmine.jcvi.org/medicmine/api.do?subtab=perl

Updated on Sep-16-2016 (v1.2.0, Mt4.0v2. Search MedicMine. Enter names. For genes, proteins, pathways, ontology terms, authors, etc. (e.g. Medtr2g036650, plasma membrane, sucrose synthase). Eg Medtr1g088775, Medtr2g008430, Medtr2g042330, Medtr3g084500, Medtr4g092620, Medtr5g022700, Medtr6g033260, Medtr7g072350, Medtr7g075090, Medtr7g083920, Medtr7g100345, Medtr8g028145, Medtr8g036020, Medtr8g036035, Medtr8g036040, Medtr8g036050, Medtr8g083210, Medtr8g105860. MedicMine integrates many types of data for.

3

MedicMine: Home

http://medicmine.jcvi.org/medicmine/api.do

Updated on Sep-16-2016 (v1.2.0, Mt4.0v2. Search MedicMine. Enter names. For genes, proteins, pathways, ontology terms, authors, etc. (e.g. Medtr2g036650, plasma membrane, sucrose synthase). Eg Medtr1g088775, Medtr2g008430, Medtr2g042330, Medtr3g084500, Medtr4g092620, Medtr5g022700, Medtr6g033260, Medtr7g072350, Medtr7g075090, Medtr7g083920, Medtr7g100345, Medtr8g028145, Medtr8g036020, Medtr8g036035, Medtr8g036040, Medtr8g036050, Medtr8g083210, Medtr8g105860. MedicMine integrates many types of data for.

4

MedicMine: Template queries page

http://medicmine.jcvi.org/medicmine/templates.do

Updated on Sep-16-2016 (v1.2.0, Mt4.0v2. Templates are predefined queries, each has a simple form and a description. Click on a template to run it, you can search for templates by keyword and filter them by category. 1) {return filterWebSearchablesHandler(event, this, 'template', 'all templates');}" onKeyPress="return disableEnterKey(event);" disabled="true" value=" / Filter:. Enter a new List name:. You are not logged in. Log in. To mark items as favourites. Keyword - GO terms and Genes. Smith RN, et al...

5

MedicMine: Lists

http://medicmine.jcvi.org/medicmine/bag.do?subtab=upload

Updated on Sep-16-2016 (v1.2.0, Mt4.0v2. Upload list of identifiers. Create a new list. Select the type of list to create and either enter in a list of identifiers or upload identifiers from a file. A search will be performed for all the identifiers in your list. Separate identifiers by a comma. Qualify any identifiers that contain whitespace with double quotes like so: "even skipped". M truncatula f. tricycla. M truncatula var. truncatula. Click to see an example). InterMine is funded by the.

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LINKS TO THIS WEBSITE

mines.legumeinfo.org mines.legumeinfo.org

BeanMine: Home

http://mines.legumeinfo.org/beanmine/begin.do

A mine with bean data from the LIS tripal.chado database. Search this mine. Enter names. Examples: Phvul.001G011500, Phvul.001G011500.1, Seed weight 3-2. Welcome to the LIS BeanMine! This mine integrates many types of data for string bean. It is currently under development by LIS/NCGR as a demo built solely from the LIS tripal.chado database. Contact Sam Hokin shokin at ncgr dot org. Check out the new Shared Motif Search analysis of this specially selected list of upstream gene flanking regions! InterMin...

legumeinfo.org legumeinfo.org

Medicago truncatula - barrel medic | LIS - Legume Information System

https://www.legumeinfo.org/organism/Medicago/truncatula

Skip to main content. LIS - Legume Information System. Information about legume traits for crop improvement. Gene search and basket (sets of genes). Publications (for data at LIS). A close relative of alfalfa ( M. sativa. Is widely used as a model in legume biology. It is physically small in stature, with a small genome, and has a short generation-to-generation time. The genome version available on LIS is Mt4.0, publication associated with this genome version is available here: Tang, H. et al.

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LegumeMine: Custom query

https://intermine.legumefederation.org/legumemine/customQuery.do

A mine with data for several organisms from LIS and other sources. Advanced users can use a flexible query interface to construct their own data mining queries. The QueryBuilder lets you view the data model, apply constraints and select output. You can also export queries to share them with others. Import query from XML. Login to view saved queries. Select a Data Type to Begin a Query. Click on a class name for a description or double click on a class name to create a new query starting at that class.

intermine.legumefederation.org intermine.legumefederation.org

LegumeMine: Lists

https://intermine.legumefederation.org/legumemine/bag.do

A mine with data for several organisms from LIS and other sources. Upload list of identifiers. Create a new list. Select the type of list to create and either enter in a list of identifiers or upload identifiers from a file. A search will be performed for all the identifiers in your list. Separate identifiers by a comma. Qualify any identifiers that contain whitespace with double quotes like so: "even skipped". Click to see an example). Or Upload identifiers from a .txt file. InterMine is funded by the.

intermine.legumefederation.org intermine.legumefederation.org

LegumeMine: Home

https://intermine.legumefederation.org/legumemine/mymine.do

A mine with data for several organisms from LIS and other sources. Search this mine. Enter names. Examples: Glyma.16G153700, Glyma.16G153700.1, BARC-007901-00205, Seed yield 15-5. This mine integrates data for multiple legume species, currently string bean. It is currently under development by LegFed/NCGR as a demo built from the LIS tripal.chado database (genomic data) as well as exports from other sources (e.g. LIS, Soybase, Peanutbase). Contact Sam Hokin: shokin at ncgr dot org. Introns have been added.

intermine.legumefederation.org intermine.legumefederation.org

LegumeMine: Lists

https://intermine.legumefederation.org/legumemine/bag.do?subtab=upload

A mine with data for several organisms from LIS and other sources. Upload list of identifiers. Create a new list. Select the type of list to create and either enter in a list of identifiers or upload identifiers from a file. A search will be performed for all the identifiers in your list. Separate identifiers by a comma. Qualify any identifiers that contain whitespace with double quotes like so: "even skipped". Click to see an example). Or Upload identifiers from a .txt file. InterMine is funded by the.

mines.legumeinfo.org mines.legumeinfo.org

PeanutMine: Home

http://mines.legumeinfo.org/peanutmine/begin.do

A mine with peanut data from LIS PeanutBase. Search this mine. Enter names. Examples: Aradu.000JC, Aradu.000JC.1, GM1069. Welcome to the LIS PeanutMine! This mine integrates many types of data for peanuts. It is currently under development by LIS/NCGR as a demo built from Peanutbase, via chado and GFF files. database. Contact Sam Hokin shokin at ncgr dot org. Check out the new Shared Motif Search analysis of this specially selected list of upstream gene flanking regions! Introns have been added.

intermine.legumefederation.org intermine.legumefederation.org

LegumeMine: Data Categories

https://intermine.legumefederation.org/legumemine/dataCategories.do

A mine with data for several organisms from LIS and other sources. This page lists all data sources loaded along with the date the data was downloaded and related publication. NOTE: All external links open in a new window. The Legume Federation is funded by the. InterMine is funded by the. And interoperation is funded by the. LegFed LegumeMine (various legumes). LIS BeanMine (string bean). LIS PeanutMine (several peanut species).

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Home - MedicMind

Content management made easy. You are not logged in [Login]. MedicMind is a provider of software solutions for the scientific community. We offer a wide variety of software products and consultant services.

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MedicMine: Home

Search MedicMine. Enter names. For genes, proteins, pathways, ontology terms, authors, etc. (e.g. HIPPO DROME, glycolysis,. Eg Medtr5g024970.2,Medtr8g074930.1, Medtr4g124660.2. MedicMine integrates many types of data for. You can run flexible queries, export results and analyse lists of data. The gene models and other genome annotation in MedicMine are provided by a variety of source databases including: UniProt, Ensembl and other data sources. Read more. Perl, Python, Ruby and &.

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