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MEGARes

From MEG, the Microbial Ecology Group. Search MEGARes by keyword or annotation term. Welcome to MEGARes: an Antimicrobial Database for High-Throughput Sequencing. Legend for Figure 1:. Figure 1. A.) This annotation graph contains no cycles (is a tree), as nodes 1 and 2 do not share children and are therefore independent. B.) In contrast, node 3 and node 4 share node 5 as a child, which creates a cycle in the annotation graph. To explore and download sequences by CLASS, MECHANISM, or GROUP. For the popula...

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MEGARes | megares.meglab.org Reviews

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From MEG, the Microbial Ecology Group. Search MEGARes by keyword or annotation term. Welcome to MEGARes: an Antimicrobial Database for High-Throughput Sequencing. Legend for Figure 1:. Figure 1. A.) This annotation graph contains no cycles (is a tree), as nodes 1 and 2 do not share children and are therefore independent. B.) In contrast, node 3 and node 4 share node 5 as a child, which creates a cycle in the annotation graph. To explore and download sequences by CLASS, MECHANISM, or GROUP. For the popula...

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MEGARes | megares.meglab.org Reviews

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From MEG, the Microbial Ecology Group. Search MEGARes by keyword or annotation term. Welcome to MEGARes: an Antimicrobial Database for High-Throughput Sequencing. Legend for Figure 1:. Figure 1. A.) This annotation graph contains no cycles (is a tree), as nodes 1 and 2 do not share children and are therefore independent. B.) In contrast, node 3 and node 4 share node 5 as a child, which creates a cycle in the annotation graph. To explore and download sequences by CLASS, MECHANISM, or GROUP. For the popula...

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MEGARes

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From MEG, the Microbial Ecology Group. Search MEGARes by keyword or annotation term. Browse Database or Search. By Keyword or Annotation Header.

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Welcome to AmrPlusPlus’s documentation! — AmrPlusPlus 1.0 documentation

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Example Analysis and Output. Installation to Run AMR. Upload Data into AMR. User Manual (Options and Settings). Welcome to AmrPlusPlus’s documentation! AmrPlusPlus is an Easy to Use App that Identifies and Characterizes Resistance Genes within Sequence Data. That is intuitive and easy to use. The pipeline takes advantage of current and new tools to help identify and characterize resistance genes within metagenomic sequence data. The pipeline can be used under a local instance of Galaxy. Together, these t...

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MEGARes

http://megares.meglab.org/download/index.php

From MEG, the Microbial Ecology Group. Search MEGARes by keyword or annotation term. Download MEGARes Files or Search. By Keyword or Annotation Header. Version 1.0.1 (1 December 2016). Version 1.0.0 (25 October 2016).

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Discussions of Recent Publications from the CSU Microbial Ecology Group. Summaries and discussion of our recent publications to highlight:. Key research questions being addressed by the study. Novel aspects of the study design. What we view as the most important research findings. Summary Topic: Resistome diversity in cattle and the environment decreases during beef production , published March 8, 2016, in eLife. See Discussion by Paul Morley here. Succinct Colored de Bruijn Graphs. Lakin S*, Dean C*, No...

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February 14, 2017 – Succinct Colored de Bruijn Graphs. Our paper Succinct Colored de Bruijn Graphs was just published in Bioinformatics. January 28, 2017 Steven Lakin Awared 1st place for outstanding oral presentation at the 18th Annual CVMBS Research Day. December 20, 2016 Paul Morley is interviewed by Colorado Public Radio. December 6, 2016 Enrique Doster Awarded 2 nd. Place for outstanding oral presentation at CRWAD 2016. November 28, 2016 An introduction to our new database, MEGARes, is published.

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Whole Genome Sequencing 101. Introduction to the Interpretation of Whole Genome Sequencing Data in Food Safety. Using Whole Genome Sequencing to Protect Public Health and Enhance Food Safety.

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UNITED STATES DEPARTMENT OF AGRICULTURE (USDA). Improving our understanding of the ecology of antimicrobial resistance in food production using Bayesian model and machine learning approach. CSU-USDA Antimicrobial Resistance Surveillance. Morley PS and Belk KE. Pardigm shift: revolutionizing our understanding of antimicrobial resistance ecology through whole genome analysis of microbial communities. Morley PS, Belk KE, and Yang H. NATIONAL CATTLEMAN’S BEEF ASSOCIATION (NCBA). Belk KE and Morley PS. Survei...

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Resistome diversity in cattle and the environment decreases during beef production

https://meg.colostate.edu/publications/present-2016/resistome-diversity-in-cattle-and-the-environment-decreases-during-beef-production

Resistome diversity in cattle and the environment decreases during beef production. Noyes NR, Yang X, Linke LM, Magnuson RJ, Dettenwanger A, Cook S, Geornaras I, Woerner DR, Gow SP, McAllister TA, Yang H, Ruiz J, Jones KL, Boucher CA, Morley PS, Belk KE.

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megares.meglab.org

MEGARes

From MEG, the Microbial Ecology Group. Search MEGARes by keyword or annotation term. Welcome to MEGARes: an Antimicrobial Database for High-Throughput Sequencing. Legend for Figure 1:. Figure 1. A.) This annotation graph contains no cycles (is a tree), as nodes 1 and 2 do not share children and are therefore independent. B.) In contrast, node 3 and node 4 share node 5 as a child, which creates a cycle in the annotation graph. To explore and download sequences by CLASS, MECHANISM, or GROUP. For the popula...

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