bioinf.comav.upv.es
Getting here — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/getting_here.html
Our complete address is:. Bioinformatics and Genomics group COMAV institute Stair I, second floor CPI Building (Ciutat Politecnica de la Innovacio) Campus de Vera Camino de Vera s/n 46022 Valencia Spain. You can find information about how to get here at the UPV. Web site and at google maps. Is licensed under a Creative Commons Reconocimiento 4.0 Internacional License.
bioinf.comav.upv.es
Introducción a la bioinformática — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/courses/intro_bioinf/index.html
Bases de datos biológicas. Práctica bases de datos. Búsqueda de secuencias en bases de datos. Métodos predictivos en ADN y ARN. Introducción al análisis de filogenias. Práctica análisis de filogenias. Práctica anotación con Blast2GO. Prácticas bases de datos genómicas. Práctica ensamblaje de secuencias. Introducción a la bioinformática. Búsqueda en bases de datos (ej. Entrez),. Secuenciación de Sanger,. Formatos de ficheros de secuencia,. Proyectos de secuenciación con Staden,. Bases de datos biológicas.
bioinf.comav.upv.es
People — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/people.html
Five people compose the bioinformatic and genomic group at COMAV:. After doing a PhD on molecular genetics moved to the COMAV institute and has worked on plant genetic variation on several horticultural species and on bioinformatics. As a bioinformatician has experience on the sequence analysis, especially on transcriptomes. Contact: jblanca @. Contact: jcanizares @. Contact: jmonteropau @. Contact: pziarsolo @. Contact: vicgarb4 @.
cucurbigene.upv.es
Zucchini genome v3.1
https://cucurbigene.upv.es/genome-v3.1
Genetic map zucchini x scalop. Genectic maps zs and ps. Genome v3.1 Disclamer. These data have been funded and produced by COMAV s Bioinformatics and Genomics and Cucurbits Breeding groups. This pre-publication data is preliminary and may contain errors and be incomplete. The purpose of this policy is to make available the data to scientific community to facilitate the research on C. pepo. The data may be freely downloaded and used by all who respect the restrictions in the previous paragraph. While ...
cucurbigene.upv.es
Trancriptome v3
https://cucurbigene.upv.es/db/transcriptome_v3
Genetic map zucchini x scalop. Genectic maps zs and ps. These data have been funded and produced by COMAV s Bioinformatics and Genomics and Cucurbits Breeding groups. This pre-publication data is preliminary and may contain errors and be incomplete. The purpose of this policy is to make available the data to scientific community to facilitate the research on C. pepo. Download the C.pepo trancriptome v3 here. Instituto para la Conservación y Mejora de la Agrodiversidad Valenciana (COMAV). Universidad ...
cucurbigene.upv.es
Transcriptome v1
https://cucurbigene.upv.es/db/transcriptome_v1
Genetic map zucchini x scalop. Genectic maps zs and ps. 526731, 454 sequences. Cucurbita pepo L. ssp. pepo. Lleaves, flowers and roots. 413612, 454 sequences. Cucurbita pepo L. ssp. pepo. Lleaves, flowers and roots. 399110, 454 sequences.
bioinf.comav.upv.es
sff_extract — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/sff_extract/index.html
Warning: We consider this version of sff extract obsolete. The new sff extract is included now in our tool set seq crumbs. 454 sequence reads are usually stored in sff files. In these files the information about the reads is stored: sequece, quality and quality and adapter clips. sff extract extracts the reads from the sff files and stores them into fasta and xml or caf text files. Is licensed under a Creative Commons Reconocimiento 4.0 Internacional License.
bioinf.comav.upv.es
Courses — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/courses.html
Linux y Python para las ciencias de la vida. Linux para las ciencias de la vida. 1 ed Linux para las ciencias de la vida:. Del 03/10/2016 al 05/10/2016. Mail us if your are interested in these courses and we will inform once the registration is about to open. If you are interested in organize these courses in your organization, please contact us. Is licensed under a Creative Commons Reconocimiento 4.0 Internacional License.
bioinf.comav.upv.es
NGS sequence analysis — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/courses/sequence_analysis/index.html
NGS sequence file formats. SNP calling and filtering. Dealing with big result files. Maize SNP calling practice. The course deals with the analysis from NGS reads from the 454, Solid and Illumina sequencers. The main topics are:. Read quality control,. Despite that a small introduction to unix console usage is included in this course, could be interesting to the students to practice with the basic orders before to assist to the course. There are several interesting courses on line, such as:. The Michigan...
cucurbigene.upv.es
Run
https://cucurbigene.upv.es/tools/blastplus/run
Genetic map zucchini x scalop. Genectic maps zs and ps. Cucurbita pepo comav transcriptome v1. Cucurbita pepo comav transcriptome v3. Cucurbita pepo icugi unigenes v1. Zucchini genome v3.1. Zucchini genome v3.2.
