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The Human Genomic Melting Map [Supplementary Materials]

The Human Genomic Melting Map. Liu F, Tostesen E, Sundet JK, Jenssen TK, Bock C, et al. (2007) PLoS Comput Biol. In press. Doi:10.1371/journal.pcbi.0030093.eor). Contact: Eivind Hovig ( ehovig@radium.uio.no. Brief Introduction of the Human Genomic Melting Map Project. Online Tool for Calculting Parameters of Loop Entroopy Factor Approximation. Human Genomic Melting Map Data Files (Based on UCSC release "hg17"). Human Genomic Melting Map Data Files (Based on UCSC release "hg18"). Fang Liu, DNR, Oslo Norway.

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The Human Genomic Melting Map [Supplementary Materials] | meltmap.uio.no Reviews

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The Human Genomic Melting Map. Liu F, Tostesen E, Sundet JK, Jenssen TK, Bock C, et al. (2007) PLoS Comput Biol. In press. Doi:10.1371/journal.pcbi.0030093.eor). Contact: Eivind Hovig ( ehovig@radium.uio.no. Brief Introduction of the Human Genomic Melting Map Project. Online Tool for Calculting Parameters of Loop Entroopy Factor Approximation. Human Genomic Melting Map Data Files (Based on UCSC release hg17). Human Genomic Melting Map Data Files (Based on UCSC release hg18). Fang Liu, DNR, Oslo Norway.

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3 supplementary analytical results

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The Human Genomic Melting Map [Supplementary Materials] | meltmap.uio.no Reviews

https://meltmap.uio.no

The Human Genomic Melting Map. Liu F, Tostesen E, Sundet JK, Jenssen TK, Bock C, et al. (2007) PLoS Comput Biol. In press. Doi:10.1371/journal.pcbi.0030093.eor). Contact: Eivind Hovig ( ehovig@radium.uio.no. Brief Introduction of the Human Genomic Melting Map Project. Online Tool for Calculting Parameters of Loop Entroopy Factor Approximation. Human Genomic Melting Map Data Files (Based on UCSC release "hg17"). Human Genomic Melting Map Data Files (Based on UCSC release "hg18"). Fang Liu, DNR, Oslo Norway.

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meltmap.uio.no

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The Human Genomic Melting Map [Supplementary Materials]

http://meltmap.uio.no/rawdata-hg18.html

The Human Genomic Melting Map. Liu F, Tøstesen E, Sundet JK, Jenssen TK, Bock C, et al. PLoS Comput Biol. In press. Doi:10.1371/journal.pcbi.0030093.eor). Human Genomic Melting Map Data Files (based on UCSC release "hg18"). Size of Compressed File. Size of Decompressed File.

2

The Human Genomic Melting Map [Supplementary Materials]

http://meltmap.uio.no/rawdata.html

The Human Genomic Melting Map. Liu F, Tøstesen E, Sundet JK, Jenssen TK, Bock C, et al. PLoS Comput Biol. In press. Doi:10.1371/journal.pcbi.0030093.eor). Human Genomic Melting Map Data Files (based on UCSC release "hg17"). Size of Compressed File. Size of Decompressed File.

3

The human genomic melting map is a calculated representation ofcooperativity in the human genome

http://meltmap.uio.no/intro.html

The Human Genomic Melting Map. Tøstesen E, Sundet JK, Jenssen TK, Bock C, et al. (2007) PLoS Comput Biol. In Press. Doi:10.1371/journal.pcbi.0030093.eor). Brief Introduction of the Human Genomic Melting Map Project. The human genomic melting map is a calculated representation of cooperativity. The group has had a long standing interest in methods for mutation detection, and has published a significant body of papers on variations of denaturing gradient gel electrophoresis to this end. Presently, the ...

4

The Human Genomic Melting Map [Supplementary Materials]

http://meltmap.uio.no/tools/loopentropy.html

The Human Genomic Melting Map. Liu F, Tøstesen E, Sundet JK, Jenssen TK, Bock C, et al. (2007) PLoS Comput Biol. In press. Doi:10.1371/journal.pcbi.0030093.eor). Online Tool for Calculating the Parameters of Loop Entropy Factor Approximation. We here provide an online tool for calculating the parameter values for all the terms in the loop entropy approximation for arbitrary sequence length and loop exponent:. Http:/ stitchprofiles.uio.no/loopentropy.php.

5

The Human Genomic Melting Map [Supplementary Materials]

http://meltmap.uio.no/analysis.html

The Human Genomic Melting Map. Liu F, Tøstesen E, Sundet JK, Jenssen TK, Bock C, et al. (2007) PLoS Comput Biol. In press. Doi:10.1371/journal.pcbi.0030093.eor). A Statistics of 'hg17' Human Genome Sequences (From UCSC GoldenPath Genome Browser) [PDF document]. B Global GC Content and Base Pair Composition Statistics of 'hg17' Human Genome Sequences [PDF document]. C Global Statistics of Human Genomics Melting Map [1Kbp window, PDF document]. 100 bp window, PDF document]. 100bp window, PDF document].

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stitchprofiles.uio.no

DNA Melting - stitchprofiles.uio.no - Loop Entropy

http://stitchprofiles.uio.no/loopentropy.php

DNA Melting - Loop Entropy. Choose a type of calculation. This page contains an online tool for calculating the parameters of a Fixman-Freire loop approximation for arbitrary DNA sequence length and loop exponent given as user input. The exact loop entropy factor is. Is the loop size (one plus the number of melted basepairs), σ is the cooperativity (or nucleation or initiation) constant,. Where the power function is replaced by some multi-exponential function. Are determined by fitting. In the range [2:2.

stitchprofiles.uio.no

DNA Melting - stitchprofiles.uio.no - About

http://stitchprofiles.uio.no/about.php

DNA Melting - About. Welcome to stitchprofiles.uio.no. This server performs web-based computations on DNA melting, thus predicting the localized separation of the two strands for sequences provided by the users. The primary tool here is the stitch profile. A diagram representing the alternative conformations that partly melted DNA can adopt. This new type of diagram is an alternative to the ordinary probability profiles for describing the conformations and their statistics at a given temperature. And the...

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The Human Genomic Melting Map [Supplementary Materials]

The Human Genomic Melting Map. Liu F, Tostesen E, Sundet JK, Jenssen TK, Bock C, et al. (2007) PLoS Comput Biol. In press. Doi:10.1371/journal.pcbi.0030093.eor). Contact: Eivind Hovig ( ehovig@radium.uio.no. Brief Introduction of the Human Genomic Melting Map Project. Online Tool for Calculting Parameters of Loop Entroopy Factor Approximation. Human Genomic Melting Map Data Files (Based on UCSC release "hg17"). Human Genomic Melting Map Data Files (Based on UCSC release "hg18"). Fang Liu, DNR, Oslo Norway.

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