mepheoscience.com

rdinnager.github.io

Notes for July 25, 2014

http://rdinnager.github.io/notes/2014/07/25/notes

Notes for July 25, 2014. Worked on modelling ecological processes using multiple biodiversity metrics proposal. Thought a little about whether it might be possible to write a static page generator for blogging entirely in R. The work-horse would be the. Package. I can imagine initially an R script which takes a directory of. Files, and knits any unknit ones into. Files, as well as constructing a basic index page using a template. Then one could just push this to a github page to be rendered. Or.

rdinnager.github.io

Notes for July 22, 2014

http://rdinnager.github.io/notes/2014/07/22/notes

Notes for July 22, 2014. Spent some time this morning reading on machine learning. Discovered Metacademy. As a potentially useful resource. Also found this old Coursera course run by Geoff Hinton from University of Toronto: Neural Networks for Machine Learning. I am still kicking myself for not realizing that Univerisity of Toronto has a world-class machine learning department, while I was there, so I could have taken advantage of it. How did I not know that? From R. Script uses. Oh well, did it with.

rdinnager.github.io

The first post

http://rdinnager.github.io/2014/07/19/test

Welcome to the open science notebook of Russell Dinnage. Here I will post notes about my day to day work in ecology. This is mostly for my own benefit, but also to share thoughts with anyone who might be interested out there. Blog comments powered by Disqus. 2015 Russell Dinnage with help from Jekyll Bootstrap.

rdinnager.github.io

Pages

http://rdinnager.github.io/pages.html

2015 Russell Dinnage with help from Jekyll Bootstrap.

rdinnager.github.io

Categories

http://rdinnager.github.io/categories.html

Notes for July 28, 2014. Notes for July 25, 2014. Pre-proposal for a modelling project, etc. Notes for July 22, 2014. Notes for July 21, 2014. Fitting topic models in R. Pre-proposal for a modelling project, etc. 2015 Russell Dinnage with help from Jekyll Bootstrap.

rdinnager.github.io

Notes for July 28, 2014

http://rdinnager.github.io/notes/2014/07/28/notes

Notes for July 28, 2014. Worked on #LDA-metagenomics project. Did a bit more on testing assumption of the project here. Worked a little on #PGHG. Project (PhyloGenetic Habitat Heterogeneity). Added some documentation to the one function currently there. In a directory, opening each one zoomed to the label (always in upper left corner) and opens a dialog box were user can fill in label data. It then resaves the. And its associated RAW file (. Blog comments powered by Disqus.

rdinnager.github.io

Fitting topic models in R

http://rdinnager.github.io/notes/2014/07/20/mallet

Fitting topic models in R. I just came across a potentially useful R package called mallet. Which interfaces with MALLET. Blog comments powered by Disqus. 2015 Russell Dinnage with help from Jekyll Bootstrap.

rdinnager.github.io

Archive

http://rdinnager.github.io/archive.html

August 5, 2015. Raquo; New Postdoc begins. August 12, 2014. July 28, 2014. Raquo; Notes for July 28, 2014. July 25, 2014. Raquo; Notes for July 25, 2014. July 24, 2014. Raquo; Pre-proposal for a modelling project, etc. July 22, 2014. Raquo; Notes for July 22, 2014. July 21, 2014. Raquo; Notes for July 21, 2014. July 20, 2014. Raquo; Fitting topic models in R. July 19, 2014. Raquo; The first post. 2015 Russell Dinnage with help from Jekyll Bootstrap.

rdinnager.github.io

Leaving

http://rdinnager.github.io/notes/2014/08/12/Leaving

I discovered that my local WA beach (Scarborough Beach) has free wi-fi access! So I am thinking during my work hiatus, I will be spending some time catching up on manuscripts at the beach, watching the surfers, and enjoying the sea air. I am looking forward to it. Did some work on my phylogenetic habitat heterogeneity simulation project (#PGHG). Started writing out the models that underly it http:/ rdinnager.github.io/PGHG-Project/theModel. Version if I switch branches from. I am considering writing an R...

rdinnager.github.io

Notes for July 21, 2014

http://rdinnager.github.io/notes/2014/07/21/notes

Notes for July 21, 2014. File for huge (about 8GB csv) Return Time Distribution ( RTDs. Data (for all kmers up to k = 6) for all international Barcode of Life COI insect sequences and put it into. Project package. #data #WBHC. Using a fork of @cboettig ‘s project package template. Had to cancel my meeting this afternoon to take my car to the mechanic. This will likely eat up my afternoon :(. Perhaps I should just have an R funtion in the package which will download the file into the.