MG-RAST (the Metagenomics RAST) server is an automated analysis platform for metagenomes providing quantitative insights into microbial populations based on sequence data. The server primarily provides upload, quality control, automated annotation and analysis for prokaryotic metagenomic shotgun samples.
http://metagenomics.anl.gov/
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MG-RAST - Home | metagenomics.anl.gov Reviews
https://metagenomics.anl.gov
MG-RAST (the Metagenomics RAST) server is an automated analysis platform for metagenomes providing quantitative insights into microbial populations based on sequence data. The server primarily provides upload, quality control, automated annotation and analysis for prokaryotic metagenomic shotgun samples.
mg-rast
MG-RAST API Release of Version 1. September 17th, 2013 by folker. Hi everyone, we’ve updated our API to point to Version 1. If you need to access the previous version of our API, you can do so by going to:. Http:/ api.metagenomics.anl.gov/beta/. It’s always a good idea to reference a version of the API in your code and in your publications, so you know where your data came from. Version 1 can now be reached at either the base API URL or by explicitly including the version number:. We added a ‘delete’ but...
MG-RAST
For programmatic access visit our API site. Turn your raw sequence into analyzed data. Safely deposit your metagenomic data for public reference. Teach advanced bioinformatics tools with a shallow learning curve. This project is funded by the NIH grant R01AI123037 and by NSF grant 1645609 and uses the Magellan machine under Contract DE-AC02-06CH11357. Terms of Service Full Funding List.
metagenomics.anl.gov
MG-RAST - Home
http://metagenomics.anl.gov/metagenomics.cgi?page=Home
EXISTING USERS ». This application has been optimized for the Firefox browser. Since you are using Chrome, many features will not be available and / or behave incorrectly. Firefox is freely available here. MG-RAST (the Metagenomics RAST) server is an automated analysis platform for metagenomes providing quantitative insights into microbial populations based on sequence data. Data sets. The current server version is 3.6. We suggest users take a look at MG-RAST for the impatient.
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PATRIC
https://www.patricbrc.org/portal/portal/patric/TB
Genera Containing NIAID Category A-C / Emerging / Re-emerging Bacteria Pathogens. Complete Lists of Bacteria:. Complete List of All Tools. Data Releases and Updates. About TB @ PATRIC. Download all TB @ PATRIC genomes. Welcome to TB @ PATRIC. Mycobacterium bovis BCG str. Pasteur 1173P2. Mycobacterium smegmatis str. MC2 155. Find other Mtb genomes. Compare protein families across groups of Mtb genomes via visualization and multiple sequence alignments. Launch Protein Family Sorter. Search TB @ PATRIC.
PATRIC
https://www.patricbrc.org/portal/portal/patric/AntibioticResistance
Genera Containing NIAID Category A-C / Emerging / Re-emerging Bacteria Pathogens. Complete Lists of Bacteria:. Complete List of All Tools. Data Releases and Updates. We also incorporate antibiotic susceptibility testing results as additional genome metadata. Summary filterable AMR metadata are available from PATRIC genome lists (see Antimicrobial Resistance and Other Clinical Metadata. Additional AMR data (including panel data when provided), are available for download. Explore Genomic Features in. Find ...
Core Faculty « People « Institute for Genomics and Systems Biology
http://www.igsb.org/people/faculty
Discover. Predict. Improve. Advancing Human and Environmental Health. The University of Chicago. Professor, Department of Medicine, Section of Genetic Medicine. JavaScript must be enabled to view this email address). A cloud-based system for managing, analyzing and sharing genomic data and Sector/Sphere (sector.sourceforge.net), a cloud-based system for data intensive computing. He is also interested in developing new algorithms for the large scale analysis of genomic and phenotypic data. Has a longstand...
Fellows « People « Institute for Genomics and Systems Biology
http://igsb.anl.gov/people/fellows
Discover. Predict. Improve. Advancing Human and Environmental Health. More than 50 faculty and scientists participate in IGSB. Fellows include faculty from the University of Chicago. And Argonne National Laboratory. As well as faculty from other CBC institutions who participate as Associate or Visiting Fellows. All Fellows are engaged in activities related to the IGSB mission and help development of IGSB goals in the future. Appointments into the IGSB are made for a renewable term of five years. Dr Bell ...
Genomics, ETC.: October 2013
http://cdwscience.blogspot.com/2013_10_01_archive.html
A blog about genetics, genomics, and medical research. Monday, October 21, 2013. Analyze Your 16S rRNA Data Using MG-RAST. Register for an Account. You can use this link to register: http:/ metagenomics.anl.gov/? Automated, so registration is not immediate. It took about a day. To create an account for me. Once you receive an e-mail saying "MG-RAST - account request approved", you can sign-in for the next step. Go to the MG-RAST website: http:/ metagenomics.anl.gov/. I would recommend using Firefox.
Data Policy & Sources | KBase
http://www.kbase.us/data-policy-and-sources
Data & Tools. Data Policy & Sources. Narrative Interface Quick Start. Narrative Interface User Guide. Narrative Interface Video Tutorial. Data Upload and Download Guide. Apps & Methods. Data Policy & Sources. KBase conforms to the Information and Data Sharing Policy. Data publicly available in KBase. Comes from the sources listed on this page. Additionally, users can upload their own data to KBase to analyze it, and can choose how widely their data should be shared. Page for more information. Creative Co...
PATRIC
https://www.patricbrc.org/portal/portal/patric/Transcriptomics
Genera Containing NIAID Category A-C / Emerging / Re-emerging Bacteria Pathogens. Complete Lists of Bacteria:. Complete List of All Tools. Data Releases and Updates. View and Compare Curated Microarray Datasets from Repositories and Other Sources. TOP 5 Species with Transcriptomics Data. Characterization of the GbdR regulon in Pseudomonas aeruginosa. Transcriptional profiles of Campylobacter jejuni NCTC 11168 to 0.125mg/L erythromycin treatment. Top 5 Gene Modifications. Top 5 Experiment Conditions.
PATRIC
https://www.patricbrc.org/portal/portal/patric/Pathways
Genera Containing NIAID Category A-C / Emerging / Re-emerging Bacteria Pathogens. Complete Lists of Bacteria:. Complete List of All Tools. Data Releases and Updates. PATRIC Data is Linked to Associated Biochemical Pathways. Our analysis tools and interactive visualizations allow users to highlight regions of genome loss or conservation and ultimately look for changes within the context of functional pathways. Pathways of interest can be identified using the Comparative Pathway Tool. Porphyrin and chlorop...
PATRIC
https://www.patricbrc.org/portal/portal/patric/SpecialtyGenes
Genera Containing NIAID Category A-C / Emerging / Re-emerging Bacteria Pathogens. Complete Lists of Bacteria:. Complete List of All Tools. Data Releases and Updates. We also provide a data summary targeted specifically to Antibiotic Resistance Data. What do we mean by . Drug Targets refer to the proteins being targeted by known/approved/experimental small molecule drugs. We have integrated and mapped such drug targets from the following sources:. Virulence factors refer to the gene products that enable b...
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MR DNA next generation sequencing
Genome and Metagenome Sequencing. HELLO MR DNA METAGENOME sequencing. On HELLO MR DNA METAGENOME sequencing. February 22, 2012. HELLO MR DNA METAGENOME sequencing. Pyrosequencing 454 service provider, illumina, and ion torrent. MR DNA LAB HTTP:/ WWW.MRDNALAB.COM. Hybridization to microarrays reveals. Wwwpnas.org/content/98/17/9853.full.pdf. By AE Murray - 2001 - Cited by 143. 1, were hybridized with. From nine other Shewanella …. Microorganisms, thus influencing the concept of the. Species and our ….
metagenomesequencingcenter.com
MR DNA next generation sequencing
The Whole Picture: Total RNA Sequencing. It is well known that scientists have been interested in studying the transcriptome of organisms since the popularization of microarrays. However, a major drawback of transcriptome analysis utilizing microarray technology is the requirement that the target of interest must already be mapped. The introduction of Next Generation Sequencing (NGS) has been able to provide researchers […]. Epigenetics via ChIP-Seq (Chromatin Immunoprecipitation Sequencing). Nowadays, T...
metagenomesequencingfacility.com
MR DNA next generation sequencing
The Whole Picture: Total RNA Sequencing. It is well known that scientists have been interested in studying the transcriptome of organisms since the popularization of microarrays. However, a major drawback of transcriptome analysis utilizing microarray technology is the requirement that the target of interest must already be mapped. The introduction of Next Generation Sequencing (NGS) has been able to provide researchers […]. Epigenetics via ChIP-Seq (Chromatin Immunoprecipitation Sequencing). Nowadays, T...
metagenomesequencingservice.com
MR DNA next generation sequencing
The Whole Picture: Total RNA Sequencing. It is well known that scientists have been interested in studying the transcriptome of organisms since the popularization of microarrays. However, a major drawback of transcriptome analysis utilizing microarray technology is the requirement that the target of interest must already be mapped. The introduction of Next Generation Sequencing (NGS) has been able to provide researchers […]. Epigenetics via ChIP-Seq (Chromatin Immunoprecipitation Sequencing). Nowadays, T...
metagenomic2016.sciencesconf.org
Recent developments in Metagenomic Research - Sciencesconf.org
Mot de passe oublié? Recent developments in Metagenomic Research. Paris, October 21st, 2016. The meeting venue at BioPark auditorium. Can host around 100 participants, providing opportunities for extensive interactions among participants in a friendly and comfortable environment. Illustration adapted from Christian Sardet / Chroniques du plancton. Personnes connectées : 1.
MG-RAST - Home
EXISTING USERS ». This application has been optimized for the Firefox browser. Since you are using an unknown browser, many features will not be available and / or behave incorrectly. Firefox is freely available here. MG-RAST (the Metagenomics RAST) server is an automated analysis platform for metagenomes providing quantitative insights into microbial populations based on sequence data. Of metagenomes 199,198. Base pairs 80.48 Tbp. Of sequences 643.18 billion. Of public metagenomes 27,981.
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Web Server's Default Page. This page is generated by Parallels Plesk Panel. The leading hosting automation software. You see this page because there is no Web site at this address. You can do the following:. For more information please contact @adminemail@. Lets you run Windows on any Intel-based Mac without rebooting! The best solution for running Windows, Linux, or any of many other operating systems alongside OS X. The most efficient server virtualization technology.
Default Parallels Plesk Panel Page
Web Server's Default Page. This page is generated by Parallels Plesk Panel. The leading hosting automation software. You see this page because there is no Web site at this address. You can do the following:. For more information please contact @adminemail@. Lets you run Windows on any Intel-based Mac without rebooting! The best solution for running Windows, Linux, or any of many other operating systems alongside OS X. The most efficient server virtualization technology.
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Web Server's Default Page. This page is generated by Parallels Plesk Panel. The leading hosting automation software. You see this page because there is no Web site at this address. You can do the following:. For more information please contact @adminemail@. Lets you run Windows on any Intel-based Mac without rebooting! The best solution for running Windows, Linux, or any of many other operating systems alongside OS X. The most efficient server virtualization technology.
