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Meta Rabbit | Rabbit goes meta(genomics) | metarabbit.wordpress.com Reviews
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Rabbit goes meta(genomics)
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“Science’s Biggest Fail” | Meta Rabbit
https://metarabbit.wordpress.com/2015/03/18/sciences-biggest-fail
A Weird Python 3 Unicode Failure →. 8220;Science’s Biggest Fail”. I completely agree with Scott Adams on this one. Many posts tagged nutrition. On this blog have echoed the same sentiment). What’s is science’s biggest fail of all time? I nominate everything about diet and fitness. Maybe science has the diet and fitness stuff mostly right by now. I hope so. But I thought the same thing twenty years ago and I was wrong. Today I saw a link to an article in Mother Jones. It’s a common cop-out:. Of course, sc...
A Weird Python 3 Unicode Failure | Meta Rabbit
https://metarabbit.wordpress.com/2015/03/30/a-weird-python-3-unicode-failure
8220;Science’s Biggest Fail”. Thoughts on driverless cars →. A Weird Python 3 Unicode Failure. The following code can fail on my system:. From os import listdir. For f in listdir(‘.’):. UnicodeEncodeError: ‘utf-8’ codec can’t encode character ‘ udce9′ in position 13: surrogates not allowed. I have a file with the name b’Latin1 file: xe9’. This is a filename with a “é” encoded using Latin-1 (which is byte value xe9). I can understand what is happening, but it’s just a mess. [1]. Here is a complete example:.
Friday Links | Meta Rabbit
https://metarabbit.wordpress.com/2015/05/29/friday-links-32
Thoughts on driverless cars. XKCD Explains why food in San Sebastian is so good →. Of the nutrition literature is brilliant. A journalist got a paper published showing that chocolate helps you lose weight just to show how easy it is to get random results published. Or as one prescient reader of the 4 April story in the. Put it, Every day is April Fool’s in nutrition. Long time readers will know that the awful state of nutrition “research” is a pet peeve. Which features a plot I did). Luis Pedro Coelho is...
XKCD Explains why food in San Sebastian is so good | Meta Rabbit
https://metarabbit.wordpress.com/2015/06/16/xkcd-explains-why-food-in-san-sebastian-is-so-good
Fact of the Day: A Bacterium has only 63 free proton ions! XKCD Explains why food in San Sebastian is so good. If you like food and you have not yet been to San Sebastian, you’re doing life wrong. I think this xkcd comic explains why the food in San Sebastian is so good:. This is a place where many bars serve elaborate pintxos (small dishes) to a wide audience, food items which would be fancy and expensive cuisine anywhere else:. Pork hand with liver. Leave a Reply Cancel reply. Enter your comment here.
Meta Rabbit | Rabbit goes meta(genomics) | Page 2
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Newer posts →. Update a recent post: Should “we” prefer more expensive medications? Today I ran across this paper. I cannot find a decent offline email client. Of course, if there was decent wireless data coverage everywhere, this would not be an issue [1]. Except perhaps for data charges. However, as the world stands today, I can get neither a good data connection nor decent software to handle this.). And HTML is a nuisance in those [4]. I also enjoy drag&dropping attachments. It is interesting to see h...
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Quantitative Ease by Carola Binder: May 2015
http://carolabinder.blogspot.com/2015_05_01_archive.html
Quantitative Ease by Carola Binder. Monday, May 25, 2015. The Limited Political Implications of Behavioral Economics. On Marginal Revolution contends that progressives use findings from behavioral economics to support the economic policies they favor, while ignoring the implications that support conservative policies. The short post, originally a comment by blogger and computational biologist Luis Pedro Coelho. Is perhaps intentionally controversial, arguing that loss aversion. Confirmation bias when we ...
FDA Loses Another Free Speech Case - Marginal REVOLUTION
http://marginalrevolution.com/marginalrevolution/2015/08/fda-loses-another-free-speech-case.html
FDA Loses Another Free Speech Case. On August 10, 2015 at 7:28 am. A federal court in New York delivered a setback to the Food and Drug Administration, ruling the agency can’t bar a drug company from marketing a pill for off-label use as long as the claims are truthful. And the court agreed. In Washington Legal Foundation v. Friedman. For example, the DC court issued an injunction preventing the FDA from prohibiting, restricting, sanctioning or otherwise seeking to limit pharmaceutical and device manufac...
Biography
http://luispedro.org/biography
Also see my resume. And CV (PDF format). Luis Pedro Coelho is a postdoctoral researcher in Peer Bork’s group at the European Molecular Biology Laboratory (EMBL). He has a PhD from Carnegie Mellon University where he worked under the supervision of Prof. Bob Murphy and a MSc from Instituto Superior Técnico in Lisbon, where he worked with Prof Arlindo Oliveira. He currently works on the analysis of microbial communities in different environments, such as the marine environment. Or the human gut. Luis Pedro...
Some Derivations
http://luispedro.org/derivations
Here are a few things I use all the time, so I decided to start writing them down instead of always re-deriving them on the fly. Some were checked with Sage. I tend to make silly mistakes when I think that it's just manipulations now, so I like the check. Multiplication of two gaussians. Includes all normalisations, unlike other derivations online which stop at here is a Normal distribution). Convolution of two Gaussians. Bayesian odds ratio of multinomials. Generalization of Subcellular Location.
Resumé
http://luispedro.org/resume
A long-form CV is available as a PDF Version. PhD in Computational Biology, 2006 2011. Carnegie Mellon University, Pittsburgh. Modeling the Space of Subcellular Location Patterns Using Images and Other Sources of Information. Advised by Prof. Robert F. Murphy. MS in computer science, Instituto Superior Técnico (Technical University Lisbon), 2006. Bayesian Network Parameter Estimation Using Noisy Observations or Soft Evidence. Advised by Prof. Arlindo Oliveira. Finished top of my class. Shinichi Sunagawa,...
SLIF
http://luispedro.org/projects/slif
Structured Literature Image Finder` (previously, *Subcellular Location Image Finder. Which was project from the Murphy Lab. Which I was a part of. It searches through scientific journals, looking for images, which it categorises, makes available, and (partially) analyses. The figure above (from Coelho et al., 2010. Is a diagram of the SLIF pipeline: figures are extracted from papers, broken up into panels and captions, which are then analysed to build navigavtion models. By Luis Pedro Coelho, Amr Ahmed, ...
Mahotas
http://luispedro.org/software/mahotas
A dedicated mahotas page with documentation is available at http:/ mahotas.rtfd.org. This page is just a summary. If you are using mahotas in a scientific publication, please cite:. Coelho, L.P. 2013. Mahotas: Open source software for scriptable computer vision. Journal of Open Research Software 1(1):e3, DOI: http:/ dx.doi.org/10.5334/jors.ac. Mahotas is a set of functions for image processing and computer vision in Python. It was originally designed for bioimage informatics. The code is well documented.
Erdös-Bacon
http://luispedro.org/erdos-bacon
My Erdös-Bacon number is 7. My Erdös Number is 4. Luis Pedro Coelho Robert F. Murphy [Prof. Murphy was my PhD advisor and we have several papers together. Robert F. Murphy Ziv Bar Joseph [ MR2860072. Ziv Bar Joseph Noga Alon [ MR2779292. Noga Alon Paul Erdös [ MR818591. I used the AMS Collaboration links tool. But inputting my name directly led to a longer link. My Bacon Number is 3. Luis Pedro Coelho Lisa Ann Goldsmith in Progression. Lisa Ann Goldsmith Jonathan Tucker in The Next Three Days.
Jug
http://luispedro.org/software/jug
Two talks about jug coming up:. At the Heidelberg Python Meetup. 19 or 20 July. In Berlin at BOSC. Bioinformatics Open Source Conference). Light-weight, Python only, distributed computing framework. Jug allows you to write code that is broken up into tasks and run different tasks on different processors. You can also think of it as a lightweight map-reduce type of system, although it's a bit more flexible (and less scalable). Jug Documentation and Tutorial. Function is so that it does not run too fast.
News
http://luispedro.org/news
I was in Lisbon for the 2016 edition of the Lisbon Machine Learning Summer School. Presenting a tutorial on the first day. I attended the Sloan Early Career Workshop on the Microbiology of the Built Environment. I gave an invited keynote in Florence ate PYCON Sette. I was New Orleans for the 2016 Ocean Sciences Meeting. I presented a poster on our metagenomics work. And gave a talk on our environmental imaging work. I taught at the Lisbon Machine Learning School. Paper out in Science. Traveling to Univer...
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New Page 1
Monday, October 20, 2008. Somebody got any job recommendations? Sunday, February 10, 2008. I dunno if anyone still reads my stagnant blog but just to inform u guys that i've shifted to www.metar7.multiply.com. Feel free to drop by and drop me a msg there. Im not closing this blog. it has been filled with different types of memories and i wish to keep it that way. but rest assured that i will be updating here once in a blue moon. :). Friday, November 02, 2007. Its been awhile since i blogged! And tmr im o...
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Meta Rabbit | Rabbit goes meta(genomics)
XKCD Explains why food in San Sebastian is so good. If you like food and you have not yet been to San Sebastian, you’re doing life wrong. I think this xkcd comic explains why the food in San Sebastian is so good:. This is a place where many bars serve elaborate pintxos (small dishes) to a wide audience, food items which would be fancy and expensive cuisine anywhere else:. Pork hand with liver. On the TV, there was an ad for a place that sells molecular cuisine equipment. Last week. If you don’t...3 There...
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Metaracanga
Para os que criam uma realidade e acreditam. Sexta-feira, 23 de maio de 2008. Trecho da entrevista feita pelo O Globo (21 de Maio - André Miranda - Segundo Caderno) com o escritor colombiano Fernado Vallejo, autor de "O despenhadeiro" e figura aguardada pela Flip:. Se o senhor tivesse que escolher entre o presidente Hugo Chavez, e o presidente colombiano Álvaro Uribe, quem escolheria? VALLEJO: Para o paredão de fuzilamento? Ambos Por serem enganadores, moleques e canalhas". Aconteceu alguma vez com você?
Metarace: Cycling Results
2017 Tour of Margaret River. Chief Commissaire: Ken Wibberly. Stage 1: The Rollercoaster. Stage 2: Kandalee Catapult. Stage 3: Mur de Hay. Stage 4: Cascade of Champions. Date: Saturday June 3 and Sunday June 4 2017. Kalgoorlie - Menzies - Leonora. Organiser: Eastern Goldfields CC. View details →. View details →. View details →. Kalgoorlie Miner Community Challenge - Menzies. View details →. 8592; Event Site. 8592; 2016 Results. 8592; 2015 Results. 8592; 2014 Results. 8592; 2013 Results. Sturt St, Ballarat.
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Segunda-feira, 2 de agosto de 2010. Chegamos ao último post deste blog. Mas não vamos parar de escrever. Criamos um novo blog, agora com foco mais determinado: discutir a Comunicação de Interesse Público, procurando enriquecer o conhecimento sobre esse assunto, que consideramos relevante para o futuro do país, pois a comunicação pode fortalecer o interesse público, consolidando a democracia que construímos dia a dia. Agradecemos a todos que colaboraram e convidamos para a ComCIP. Livro Fala, Crioulo.
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