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MetaRef

Several ways to search MetaRef database:. 1 keyword search for taxonomy. For example, try search the database using the keyword "vulgatus". 2 Genome lookup using IMG genome ID. 3 Gene lookup using IMG gene ID. Keywords in Gene Description. Commonly Found in Human Microbiome). MetaRef Database v 1.0. MetaRef paper is now available on PubMed. For tutorials of the MetaRef website, please visit our Help. For example, you can have a look to the core. Gene families, and marker. The browsable phylogenetic distr...

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CONTACTS AT METAREF.ORG

Curtis Huttenhower

655 Hun●●●●●●● Avenue

Bo●●on , Massachusetts, 02115

US

1.61●●●●4902
le●●●●●●@hsph.harvard.edu

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Curtis Huttenhower

655 Hun●●●●●●● Avenue

Bo●●on , Massachusetts, 02115

US

1.61●●●●4902
le●●●●●●@hsph.harvard.edu

View this contact

Curtis Huttenhower

655 Hun●●●●●●● Avenue

Bo●●on , Massachusetts, 02115

US

1.61●●●●4902
le●●●●●●@hsph.harvard.edu

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MetaRef | metaref.org Reviews
<META>
DESCRIPTION
Several ways to search MetaRef database:. 1 keyword search for taxonomy. For example, try search the database using the keyword vulgatus. 2 Genome lookup using IMG genome ID. 3 Gene lookup using IMG gene ID. Keywords in Gene Description. Commonly Found in Human Microbiome). MetaRef Database v 1.0. MetaRef paper is now available on PubMed. For tutorials of the MetaRef website, please visit our Help. For example, you can have a look to the core. Gene families, and marker. The browsable phylogenetic distr...
<META>
KEYWORDS
1 download
2 keyword search help
3 hide
4 microbial taxonomy
5 img genome id
6 img gene id
7 browse
8 genomes
9 taxonomy correction info
10 highlighted clades
CONTENT
Page content here
KEYWORDS ON
PAGE
download,keyword search help,hide,microbial taxonomy,img genome id,img gene id,browse,genomes,taxonomy correction info,highlighted clades,airways nares,corynebacterium accolens,propionibacterium acnes,staphylo epidermidis,buccal mucosa,gemella haemolysans
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MetaRef | metaref.org Reviews

https://metaref.org

Several ways to search MetaRef database:. 1 keyword search for taxonomy. For example, try search the database using the keyword "vulgatus". 2 Genome lookup using IMG genome ID. 3 Gene lookup using IMG gene ID. Keywords in Gene Description. Commonly Found in Human Microbiome). MetaRef Database v 1.0. MetaRef paper is now available on PubMed. For tutorials of the MetaRef website, please visit our Help. For example, you can have a look to the core. Gene families, and marker. The browsable phylogenetic distr...

INTERNAL PAGES

metaref.org metaref.org
1

MetaRef

http://www.metaref.org/download

Several ways to search MetaRef database:. 1 keyword search for taxonomy. For example, try search the database using the keyword "vulgatus". 2 Genome lookup using IMG genome ID. 3 Gene lookup using IMG gene ID. Keywords in Gene Description. MetaRef v 1.0 Download. Information on all genes. DNA sequences of all centroids. Protein sequences in fasta format. HMP Data ( About HMP. Bowtie mapping results of HMP WGS reads against centroid genes. Of the HMP Samples. Reference Genomes (original source: JGI).

2

MetaRef

http://www.metaref.org/help

Several ways to search MetaRef database:. 1 keyword search for taxonomy. For example, try search the database using the keyword "vulgatus". 2 Genome lookup using IMG genome ID. 3 Gene lookup using IMG gene ID. Keywords in Gene Description. MetaRef is regularly updated every 6 months and a new version number is assigned to each update. The browsable interface refers to the most recent version of the underlying database, but all previous versions will be available in the "Download" section. The gene page p...

3

MetaRef clade: matruchotii

http://www.metaref.org/clade_id/2978

Several ways to search MetaRef database:. 1 keyword search for taxonomy. For example, try search the database using the keyword "vulgatus". 2 Genome lookup using IMG genome ID. 3 Gene lookup using IMG gene ID. Keywords in Gene Description. Clade Tree of Corynebacteriaceae. Number of Genomes in Corynebacterium matruchotii: 2. We report here all genes that are. I) consistently present in the genomes of the clade (core),. Iii) present at least once in a genome of the clade (pan). Download the centroid table.

4

MetaRef clade: melaninogenica

http://www.metaref.org/clade_id/4223

Several ways to search MetaRef database:. 1 keyword search for taxonomy. For example, try search the database using the keyword "vulgatus". 2 Genome lookup using IMG genome ID. 3 Gene lookup using IMG gene ID. Keywords in Gene Description. Clade Tree of Prevotellaceae. Number of Genomes in Prevotella melaninogenica: 2. We report here all genes that are. I) consistently present in the genomes of the clade (core),. Iii) present at least once in a genome of the clade (pan). Download the centroid table.

5

MetaRef clade: ovatus

http://www.metaref.org/clade_id/1928

Several ways to search MetaRef database:. 1 keyword search for taxonomy. For example, try search the database using the keyword "vulgatus". 2 Genome lookup using IMG genome ID. 3 Gene lookup using IMG gene ID. Keywords in Gene Description. Clade Tree of Bacteroidaceae. Number of Genomes in Bacteroides ovatus: 9. We report here all genes that are. I) consistently present in the genomes of the clade (core),. Iii) present at least once in a genome of the clade (pan). Download the centroid table.

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Segata Lab - Computational Metagenomics

http://segatalab.cibio.unitn.it/tools

Our tools are usually developed in python using the bitbucket framework. Our current and future tools are mainly located in the following locations:. For our tools we provide timely support via Google groups discussion. Check out the MetaPhlAn-users group. Most of our tools are also available through ad-hoc written Galaxy. Web interfaces. You can check out the Huttenhower Lab Galaxy page. Toolshed from which the modules can be inported into any Galaxy installation. MetAML is a computational tool for meta...

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MetaRef

Several ways to search MetaRef database:. 1 keyword search for taxonomy. For example, try search the database using the keyword "vulgatus". 2 Genome lookup using IMG genome ID. 3 Gene lookup using IMG gene ID. Keywords in Gene Description. Commonly Found in Human Microbiome). MetaRef Database v 1.0. MetaRef paper is now available on PubMed. For tutorials of the MetaRef website, please visit our Help. For example, you can have a look to the core. Gene families, and marker. The browsable phylogenetic distr...

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MetaRef

Several ways to search MetaRef database:. 1 keyword search for taxonomy. For example, try search the database using the keyword "vulgatus". 2 Genome lookup using IMG genome ID. 3 Gene lookup using IMG gene ID. Keywords in Gene Description. Commonly Found in Human Microbiome). MetaRef Database v 1.0. MetaRef paper is now available on PubMed. For tutorials of the MetaRef website, please visit our Help. For example, you can have a look to the core. Gene families, and marker. The browsable phylogenetic distr...

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