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Ensembl Metazoa

Ensembl Metazoa is a genome-centric portal for metazoan species of scientific interest

http://metazoa.ensembl.org/

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Ensembl Metazoa | metazoa.ensembl.org Reviews
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Ensembl Metazoa is a genome-centric portal for metazoan species of scientific interest
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Ensembl Metazoa | metazoa.ensembl.org Reviews

https://metazoa.ensembl.org

Ensembl Metazoa is a genome-centric portal for metazoan species of scientific interest

INTERNAL PAGES

metazoa.ensembl.org metazoa.ensembl.org
1

BioMart - MartView

http://metazoa.ensembl.org/biomart/martview

Src="http:/ metazoa.ensembl.org/i/search/mag.gif"/. Ensembl Genomes release 32 - August 2016 (c).

2

Amphimedon queenslandica - Ensembl Genomes

http://metazoa.ensembl.org/Amphimedon_queenslandica/Info/Index

Is a sponge, and was discovered in 1998 and formally described in 2006 [1]. Despite its recent identification, this native of Great Barrier Reef has already proved itself a useful subject for the study of the evolutionary origins of metazoan development [2,3], and is the first member of phylum Porifera to have had its genome sequenced. Picture credit (Creative Commons BY 2.5): Wikimedia Commons. More information and statistics. More information and statistics. Display your data in Ensembl Metazoa.

3

Ensembl Genomes: Ixodes scapularis - Details

http://metazoa.ensembl.org/Ixodes_scapularis/Info/Annotation

Ixodes scapularis Assembly and Gene Annotation. Data and its display on Ensembl Genomes are made possible through a joint effort by the Ensembl Genomes group and VectorBase, a NIAID Bioinformatics Resource Center. The source data for this genome and other resources can be accessed via the VectorBase browser. The black-legged tick, is a hard-bodied tick from the Ixodidae family. Is the primary vector for Lyme disease, transmitting the pathogenic bacterium. Picture credit (public domain): Scott Bauer.

4

Caenorhabditis elegans - Ensembl Genomes

http://metazoa.ensembl.org/Caenorhabditis_elegans/Info/Index

The genome sequence and annotation for. Are updated in Ensembl Metazoa approximately once per year. The data here corresponds with WormBase WS250. For the latest genome and annotation, please visit WormBase ParaSite. For an Ensembl-oriented view), or WormBase. Has been a major model organism for basic biomedical research for over 30 years. Genetic and molecular research in. Is hermaphroditic and distinct from the majority of other characterised nematodes which have both male and female adult animals.

5

Heliconius melpomene - Ensembl Genomes

http://metazoa.ensembl.org/Heliconius_melpomene/Info/Index

Data Source Heliconius Genome Consortium. Has large long wings with a red stripe down each forewing. It is poisonous, and has a geographical distribution from Central to South America. It is the first of the Heliconius butterflies to have its genome sequenced. Picture credit: Mauricio Linares, via Chris Jiggins. More information and statistics. More information and statistics. Display your data in Ensembl Metazoa. What can I find? More about this genebuild. Download genes, cDNAs, ncRNA, proteins - FASTA.

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LINKS TO THIS WEBSITE

jul2016.archive.ensembl.org jul2016.archive.ensembl.org

Compare genes across species

http://jul2016.archive.ensembl.org/info/website/tutorials/compara.html

Compare genes across species. Variants for my gene. ENCODE data in Ensembl. The GRCh37 assembly in Ensembl. Use my own data. Compare genes across species. Compare genes across species. Gene Trees and Homologues. A representative protein for every gene in Ensembl across all species is used to determine gene trees. Homologues are separated into Orthologues. Across different species) and Paralogues. Gene Tree help page. Gene trees and homology. Compare species in the genomic alignment view.

plants.ensembl.org plants.ensembl.org

Oryza sativa Japonica Group - Ensembl Genomes

http://plants.ensembl.org/Oryza_sativa/Info/Index

Search Oryza sativa Japonica. Oryza sativa Japonica (IRGSP-1.0). Beta vulgaris subsp. vulgaris. Oryza sativa Japonica Group. Japonica (rice) is the staple food for 2.5 billion people. It is the grain with the second highest worldwide production after. In addition to its agronomic importance, rice is an important model species for monocot plants and cereals such as maize, wheat, barley and sorghum. More information and statistics. Genome assembly: IRGSP-1.0. More information and statistics. More about the...

plants.ensembl.org plants.ensembl.org

Ensembl Genomes: Oryza sativa Japonica Group - Custom tracks - Personal Data

http://plants.ensembl.org/UserData/ManageData?time=1439362367

Track Hub Registry Search. Configurations for this page. Your data p You can rename your uploads and attached URLs by clicking on their current name in the Source column /p p a href=/info/website/upload/index.html class=popup Help on supported formats, display types, etc /a /p. Search for public track hubs. Add a custom track. Name for this data (optional):. Beta vulgaris subsp. vulgaris. Oryza brachyantha.v1.4b. O longistaminata v1.0. Oryza meridionalis v1.3. Paste in data or provide a file URL.

plants.ensembl.org plants.ensembl.org

Ensembl Genomes: Oryza sativa Japonica Group - Login - Personal Data

http://plants.ensembl.org/Account/Favourites/Reset

Login to Ensembl Plants.

plants.ensembl.org plants.ensembl.org

Ensembl Genomes: Oryza sativa Japonica Group - BLAST search

http://plants.ensembl.org/Tools/Blast?db=core

Beta vulgaris subsp. vulgaris. Ensembl Plants is produced in collaboration with Gramene. Ensembl Plants release 32 - August 2016 EMBL-EBI. EMBL-EBI Terms of use.

fungi.ensembl.org fungi.ensembl.org

Ensembl Fungi

http://fungi.ensembl.org/info/website/help/index.html

Search for a gene. Search for a genome. Eg type sac to find Saccharomyces. For easy access to commonly used genomes, drag from the bottom list to the top one · Save. Aspergillus nidulans FGSC A4. Puccinia graminis f. sp. tritici CRL 75-36-700-3. Acidomyces richmondensis BFW (. Acremonium chrysogenum ATCC 11550 (. Acremonium chrysogenum ATCC 11550. Agaricus bisporus var. bisporus H97 (. Agaricus bisporus var. bisporus H97. Agaricus bisporus var. burnettii JB137-S8 (. Allomyces macrogynus ATCC 38327 (.

fungi.ensembl.org fungi.ensembl.org

Puccinia graminis f. sp. tritici CRL 75-36-700-3 - Ensembl Genomes

http://fungi.ensembl.org/Puccinia_graminis/Info/Index

Acremonium chrysogenum ATCC 11550. Agaricus bisporus var. bisporus H97. Agaricus bisporus var. burnettii JB137-S8. Allomyces macrogynus ATCC 38327. Amanita muscaria Koide BX008. Arthrobotrys oligospora ATCC 24927. Arthroderma benhamiae CBS 112371. Arthroderma otae CBS 113480. Aspergillus fumigatus var. RP-2014. Aspergillus nidulans FGSC A4. Aspergillus niger (GCA 001515345). Aspergillus niger ATCC 1015. Aspergillus nomius NRRL 13137. Aspergillus oryzae 3.042. Aspergillus ruber CBS 135680. Cladophialophor...

grch37.ensembl.org grch37.ensembl.org

Species List

http://grch37.ensembl.org/info/about/species.html

Geek for a Week. Browser Genome Release Agreement. Ensembl name and logo policy. Credits for species images. About the Ensembl Project. The main Ensembl site focuses on vertebrate genomes - scroll down. For links to our sister sites covering invertebrates, plants, bacteria, etc. View the full Ensembl species tree. NB The table below shows only those species that were included in release 75 - for an up-to-date list, please see our main site at www.ensembl.org. Felis catus 6.2. Pan troglodytes 2.1.3.

grch37.ensembl.org grch37.ensembl.org

What's New in this release

http://grch37.ensembl.org/info/website/news.html

Pairwise Interactions File Formats. Coordinate Systems for custom tracks. Track Hub Support in Ensembl. Compare genes across species. Variants for my gene. ENCODE data in Ensembl. The GRCh37 assembly in Ensembl. Use my own data. Browse News by Topic. What's New in this release. Archives: Table of assemblies. What's New in this release. News for Ensembl GRCh37. New web displays and tools. New web displays and tools. Data slicer tool (all species). Variation Pattern Finder tool (all species). Release 71 (A...

grch37.ensembl.org grch37.ensembl.org

ENCODE data in Ensembl

http://grch37.ensembl.org/info/website/tutorials/encode.html

Compare genes across species. Variants for my gene. ENCODE data in Ensembl. The GRCh37 assembly in Ensembl. Use my own data. ENCODE data in Ensembl. ENCODE data in Ensembl. ENCODE data in Ensembl. How to view ENCODE data. Multiple data tracks relating to gene regulation, based on ENCODE data can be turned on in the ' region in detail. Page on our GRCh37 archive for human and mouse. A full tutorial on how to use these tracks. Is available on the EMBL-EBI website. Link to add ENCODE integrative analysis hub.

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