metscape.ncibi.org
MetScape 3Metscape 3 for Cytoscape is used to visualize and analyze metabolomic data.
http://metscape.ncibi.org/
Metscape 3 for Cytoscape is used to visualize and analyze metabolomic data.
http://metscape.ncibi.org/
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MetScape 3 | metscape.ncibi.org Reviews
https://metscape.ncibi.org
Metscape 3 for Cytoscape is used to visualize and analyze metabolomic data.
metscape.ncibi.org
Correlation Calculator | MetScape 3
http://metscape.ncibi.org/calculator.html
Correlation Calculator for Metabolomics Data. Download the Correlation Calculator. Download sample input file:. For this release, input files are required to be in CSV format. Input files should be tables of measurements of metabolites across multiple samples. Metabolites must be labeled, but sample labels are optional. Samples may be in either rows or columns. The example input file does not have labeled samples, and its samples are in rows. The data using a log transformation and/or autoscaling. Partia...
People | MetScape 3
http://metscape.ncibi.org/people.html
Past Developers: Terry Weymouth, Tim Hull, Glenn Tarcea. Collaborators: Chuck Burant, Marci Brandenburg, George Michailidis, Sumanta Basu. We would also like to thank the Michigan Regional Comprehensive Metabolomics Resource Core (MRC2). Support was provided by NIH grants U24 DK097153 and P30 DK089503.
Help & Support | MetScape 3
http://metscape.ncibi.org/manuals.html
MetScape 3 Help and Support. Download MetScape 3.1 User Manual. Watch MetScape Correlation Network Video Tutorial. Watch MetScape Pathway Network Video Tutorial. Watch MetScape Presentation and Demo. For sample input files and descriptions of input file formats, see Input Files. For additional help, please contact metscape-help@umich.edu. Support was provided by NIH grants U24 DK097153 and P30 DK089503.
Input Files | MetScape 3
http://metscape.ncibi.org/files.html
MetScape 3 Input Files. Download sample input files:. Input File Formats - Pathway Networks. For pathway networks, MetScape 3 allows users to upload three types of files compound files, gene files and concept files. Each type is optional, e.g. you can upload only compounds, only genes, only concepts, or any combination of the above. The gene file can contain all genes (e.g. from a microarray experiment) or significant genes only. Gene set enrichment testing is an approach used to test for predefined biol...
MetScape 3
http://metscape.ncibi.org/index.html
MetScape 3 for Cytoscape. The MetScape 3 App for Cytoscape. New in MetScape 3.1. MetScape 3.1 supports building and visualization of correlation networks, in addition to pathway networks. We developed a new method that uses the De-sparsified Graphical Lasso (DGlasso) modeling procedure to identify connectivity among large numbers of metabolites using fewer samples. DGlasso is implemented as part of our CorrelationCalculator. Launch/Install Cytoscape with MetScape 3 via Java Web Start.
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Tools for the functional interpretation of metabolomic experiments - Computational Systems Biology Group
http://csbg.cnb.csic.es/metab_rev
Tools for the functional interpretation of metabolomic experiments. Approaches (e.g genomics. Seek to massively characterizing the molecular repertories of living systems. Among them, metabolomics. Tries to determine the set of metabolites in a given biological system. As metabolomic techniques develop and allow characterizing larger sets of metabolites, researchers need automatic methods to interpret their experimental results. We can classify these tools in two groups:. More information and links.
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MetScape 3
MetScape 3 for Cytoscape. The MetScape 3 App for Cytoscape. CorrelationCalculator v1.0.1. Featuring a revamped interface, is now available. MetScape v3.1.3. For use with Cytoscape 3.4.0 and higher, is now available. New in MetScape 3.1. Program. DSPC was developed in collaboration with George Michailidis and Sumanta Basu. Please report any problems to metscape-help@umich.edu. Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.
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