MIARMASEQ.CBBIO.ES

miARma-Seq workflow | Home

Skip to main content. 1 How to install. 2 How to use miARmaSeq. To avoid these restraints, we have developed miARma-Seq. MiRNA-Seq And RNA-Seq Multiprocess Analysis tool, a comprehensive pipeline analysis suite designed for mRNA, miRNA and circRNA identification and differential expression analysis, applicable to any sequenced organism. Performs several quality control analysis creating quality reports for an easy evaluation of the data.

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miARma-Seq workflow | Home | miarmaseq.cbbio.es Reviews

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Skip to main content. 1 How to install. 2 How to use miARmaSeq. To avoid these restraints, we have developed miARma-Seq. MiRNA-Seq And RNA-Seq Multiprocess Analysis tool, a comprehensive pipeline analysis suite designed for mRNA, miRNA and circRNA identification and differential expression analysis, applicable to any sequenced organism. Performs several quality control analysis creating quality reports for an easy evaluation of the data.

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2 what is miarmaseq

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5 help and contact

6 miarma seq workflow

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miARma-Seq workflow | Home | miarmaseq.cbbio.es Reviews

https://miarmaseq.cbbio.es

Skip to main content. 1 How to install. 2 How to use miARmaSeq. To avoid these restraints, we have developed miARma-Seq. MiRNA-Seq And RNA-Seq Multiprocess Analysis tool, a comprehensive pipeline analysis suite designed for mRNA, miRNA and circRNA identification and differential expression analysis, applicable to any sequenced organism. Performs several quality control analysis creating quality reports for an easy evaluation of the data.

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miarmaseq.cbbio.es

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What is miARmaSeq? | Home

http://www.miarmaseq.cbbio.es/features

Skip to main content. 1 How to install. 2 How to use miARmaSeq. Which stands for miRNA-Seq And RNA-Seq Multiprocess Analysis, is a suite designed to study mRNAs, miRNAs and circRNAs. It is able to perform differential expression analysis, miRNA-mRNA target prediction and functional analysis among others. Most importantly, it can be applied to any sequenced organism, and it can be initiated at any step of the workflow. Is freely distributed. Stable versions can be downloaded from this link. Which not only...

2

How to use miARmaSeq | Home

http://www.miarmaseq.cbbio.es/usage

Skip to main content. 1 How to install. 2 How to use miARmaSeq. How to use miARmaSeq. In order to execute miARma-Seq, a configuration file in INI format is mandatory. This file should contain information about your experiment's setup. The general information section must in the heading [General]. Perform any analysis. So, please make sure you check for this. Page or use our examples in the next page. To check the quality of the reads and potential sequencing errors. Place reads into genomic postitions.

3

Documentation | Home

http://www.miarmaseq.cbbio.es/documentation

Skip to main content. 1 How to install. 2 How to use miARmaSeq. Presents a highly flexible modular structure to perform the different stages of the miRNA analysis. In this documentation, each module and its parameters will be extensively described, including the description of the input and output files, the different parameters for the analysis and the creation of the configuration file to execute it.

4

Help & Contact | Home

http://www.miarmaseq.cbbio.es/help

Skip to main content. 1 How to install. 2 How to use miARmaSeq. MiARmaSeq has been tested on different operative systems, with different datasets from GEO. But, nevertheless some unexpected errors could appear. Or, on the contrary, if you have a proposal regarding a missing feature that will improve miARmaseq features, please use our issue system to report these kind of notifications. Bugs and software petitions. Please click in this link. Please click in this link. For other types of questions.

5

Examples | Home

http://www.miarmaseq.cbbio.es/examples

Skip to main content. 1 How to install. 2 How to use miARmaSeq. This page provides a short tutorial-style introduction for the practical use of miARma-Seq. All the analyses are run in four simple steps. From initial raw data to final results. A full description of every possible feature in this pipeline is given in the documentation. Page Here, we include explanations of command-line options for each type of analyses to give an idea of basic usage with real data. You should go trough. Briefly, this exper...

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http://www.cbbio.es/index.php/software

Rocio Nuñez Torres, Eduardo Andrés-León and Ana M. Rojas. It is a miRNASeq analysis workflow, which automatically performs several analysis processes using state-of-art software. It includes:. A) Quality analysis of the reads (by FASTQ ). B) Adapter removal using Cutadapt or Reaper software. If the adapter information is not available a computational prediction of the adapter sequence can be performed using Minion. D) Read quantification by desired feature (premiRNA, mature miRNA,.) using Htseq-Count.

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miARma-Seq workflow | Home

Skip to main content. 1 How to install. 2 How to use miARmaSeq. To avoid these restraints, we have developed miARma-Seq. MiRNA-Seq And RNA-Seq Multiprocess Analysis tool, a comprehensive pipeline analysis suite designed for mRNA, miRNA and circRNA identification and differential expression analysis, applicable to any sequenced organism. Performs several quality control analysis creating quality reports for an easy evaluation of the data.

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