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MicroEco

A Tool for the Analysis of Complex Microbial Communities. PhyloTemp is a tool which can be used in the R environment. To visualize and cluster multiple microbial community samples based upon composition (e.g. 16S rRNA gene library taxonomic assignment or OTU composition). It is a modification of existing R heatmap and heatmap.2 (gplots) functions adding a phylogenetic aspect, as well as numerous other enhancements. If you find PhyloTemp useful please cite:. Arctic Tundra Soil 16S rRNA library.

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A Tool for the Analysis of Complex Microbial Communities. PhyloTemp is a tool which can be used in the R environment. To visualize and cluster multiple microbial community samples based upon composition (e.g. 16S rRNA gene library taxonomic assignment or OTU composition). It is a modification of existing R heatmap and heatmap.2 (gplots) functions adding a phylogenetic aspect, as well as numerous other enhancements. If you find PhyloTemp useful please cite:. Arctic Tundra Soil 16S rRNA library.
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MicroEco | microeco.org Reviews

https://microeco.org

A Tool for the Analysis of Complex Microbial Communities. PhyloTemp is a tool which can be used in the R environment. To visualize and cluster multiple microbial community samples based upon composition (e.g. 16S rRNA gene library taxonomic assignment or OTU composition). It is a modification of existing R heatmap and heatmap.2 (gplots) functions adding a phylogenetic aspect, as well as numerous other enhancements. If you find PhyloTemp useful please cite:. Arctic Tundra Soil 16S rRNA library.

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phylotemp.microeco.org phylotemp.microeco.org

MicroEco

A Tool for the Analysis of Complex Microbial Communities. PhyloTemp is a tool which can be used in the R environment. To visualize and cluster multiple microbial community samples based upon composition (e.g. 16S rRNA gene library taxonomic assignment or OTU composition). It is a modification of existing R heatmap and heatmap.2 (gplots) functions adding a phylogenetic aspect, as well as numerous other enhancements. If you find PhyloTemp useful please cite:. Sunday, May 16, 2010.

INTERNAL PAGES

microeco.org microeco.org
1

Contact Us

http://www.microeco.org/id7.html

For general information or comments:. For technical issues with PhyloTemp:.

2

MicroEco

http://www.microeco.org/index.html

A Tool for the Analysis of Complex Microbial Communities. PhyloTemp is a tool which can be used in the R environment. To visualize and cluster multiple microbial community samples based upon composition (e.g. 16S rRNA gene library taxonomic assignment or OTU composition). It is a modification of existing R heatmap and heatmap.2 (gplots) functions adding a phylogenetic aspect, as well as numerous other enhancements. If you find PhyloTemp useful please cite:. Sunday, May 16, 2010.

3

Documentation

http://www.microeco.org/cgi-bin/id3.shtml

R: Phylogenetically-Enabled Heat Map. A heat map is a false color image (basically. With a dendrogram added to the left side and/or to the top. Typically, reordering of the rows and columns according to some set of values (row or column means) within the restrictions imposed by the dendrogram is carried out. This modification of the standard R. Numeric matrix of the values to be plotted. Determines if and how the. Then it is used "as-is", ie without any reordering. If a. Determines if and how the. Charac...

4

Download

http://www.microeco.org/id11.html

Tools available for download:. PhyloTemp R function (0.5 beta). Scripts for PhyloTemp (coming soon). Bootstrapping wrapper for R DPCOA (ade4) function (coming soon). LibCompare R function (coming soon). Software available under GNU Public License. Enter supporting content here.

5

About Us

http://www.microeco.org/id1.html

MicroEco was founded in 2005 with the early development of the PhyloTemp tool. The guiding principles are to produce open source software tools to aid effective visualization and analysis of the increasingly complex data produced by microbial and viral ecology research. Shawn Polson ( CV. Sara Polson ( CV.

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MicroEco

A Tool for the Analysis of Complex Microbial Communities. PhyloTemp is a tool which can be used in the R environment. To visualize and cluster multiple microbial community samples based upon composition (e.g. 16S rRNA gene library taxonomic assignment or OTU composition). It is a modification of existing R heatmap and heatmap.2 (gplots) functions adding a phylogenetic aspect, as well as numerous other enhancements. If you find PhyloTemp useful please cite:. Arctic Tundra Soil 16S rRNA library.

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