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all models are wrong | — but some are useful | mikedewar.wordpress.com Reviews
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-- but some are useful
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MICROCOSMOGRAPHIA ACADEMICA | all models are wrong
https://mikedewar.wordpress.com/2009/03/03/microcosmographia-academica
All models are wrong. 8212; but some are useful. March 3, 2009. I came across the Microcosmographia Academia. In one of Niranjan. 8216;s slides (which are an interesting view into the world of academic politics and bureaucracy) and then found it in full at the webpage of Dr Utting of Kent University. It’s a lovely satire on academic politics from 1908 in the form of a short pamphlet. Just short enough, in fact, that I’ve wasted a good hour typesetting it [ pdf. Leave a Reply Cancel reply. Create a free w...
all models are wrong | — but some are useful | Page 2
https://mikedewar.wordpress.com/page/2
All models are wrong. 8212; but some are useful. February 28, 2009. A python module for learning bayesian network structures has surfaced on the JMLR software track. 8211; bits of the author’s blog. Are quite interesting too… This is article number 5 for the software track in JMLR, and it’s been going over a year now! I suppose 5 examples is quite enough to figure out what’s required for submission here, though, so maybe uptake will improve…. The Pirate Bay Trial. February 28, 2009. So Stina wrote a piece.
-> Going both ways in R <- | all models are wrong
https://mikedewar.wordpress.com/2010/05/19/going-both-ways-in-r
All models are wrong. 8212; but some are useful. Going both ways in R -. May 19, 2010. In response to my griping on #Rstats, asks “What’s wrong with an arrow going both ways! 8221; In R one can perfom assignment three ways:. I’m pretty sure all these things are equivalent. The only subtlety I’ve noticed so far is that to set default options in function definitions you have to use `=`. 4 Responses to “- Going both ways in R -”. May 19, 2010 at 14:08. 8220;Character variables passed to data.frame are c...
Python and Numpy integers | all models are wrong
https://mikedewar.wordpress.com/2009/03/30/python-and-numpy-integers
All models are wrong. 8212; but some are useful. Python and Numpy integers. March 30, 2009. I keep getting bitten on the bum with Python and ‘proper’ programming things. Today it’s this:. In [253]: 8* 14 Out[253]: 4398046511104L In [254]: 8* (numpy.int32(14) Out[254]: 0. I would feel guilty about this if I had to specify the type of numbers I was using, but this is a dynamic programming language! Why didn’t the int32 become a long also? Or an int64 or something that could hold my number?
More Segment HMMs | all models are wrong
https://mikedewar.wordpress.com/2009/04/23/more-segment-hmms
All models are wrong. 8212; but some are useful. April 23, 2009. It’s weird how you can muck about with structures for so long and still forget what the hell you’re doing all the time. This post is supposed to try and clarify segment HMMs a bit for me, so that I can approach the learning problem with a clear mind. It’s all very specific; and it’s all below the fold. I’m going to define the model again. Notation is important:. Some things to note. The duration of the state at time. The counting variable e...
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A place for putting things | James Hensman's Weblog
https://jameshensman.wordpress.com/2009/01/23/hello-world
James Hensman’s Weblog. January 23, 2009. A place for putting things. 8212; jameshensman @ 5:19 pm. This is a place for putting things, so that they can be found. Some of these things include thoughts on what I’m doing at the moment, which consists largely of. Probabilistic models of data. I’m hoping that by storing my thoughts, they’ll begin to make more sense. I may even start writing thoughts on my thoughts, but mostly I’m just going to put them here for safekeeping. Leave a Comment ».
January | 2009 | James Hensman's Weblog
https://jameshensman.wordpress.com/2009/01
James Hensman’s Weblog. January 29, 2009. 8212; jameshensman @ 3:17 pm. In ipython, I just found the magic function ‘%bg’, or background. If you want to run a long process, but keep the window active, this threads the task and stores the result for you to pick up later. e.g. In [1]: from numpy import matlib as ml. In [2]: %bg ml.rand(2,2). Starting job # 0 in a separate thread. In [3]: %bg ml.zeros(3). Starting job # 1 in a separate thread. In [4]: jobs[0].result. Matrix([ 0.97556473, 0.67794221],. Get c...
python.copy() | James Hensman's Weblog
https://jameshensman.wordpress.com/2009/01/29/pythoncopy
James Hensman’s Weblog. January 29, 2009. 8212; jameshensman @ 10:48 am. Assignment in python is exactly that. Assignment, not copying. For those of us who have switched to the language of the gods from some inferior mortal language (Matlab), this can lead to some frustration. For example, within my Variational Factor Analysis (VBFA) class, I need to keep a record of something I’m calling. Get called 100s of times when the class is used. Spot the problem? It’s on line 8, where. 2 Comments ». Or you’...
Expected Values (Matrices) | James Hensman's Weblog
https://jameshensman.wordpress.com/2009/02/12/expected-values-matrices
James Hensman’s Weblog. February 12, 2009. 8212; jameshensman @ 9:41 am. I’ve been fiddling around in python, implementing a Variational Bayesian Principal Component Analysis (VBPCA) algorithm. It’s true, I could do this happily in vibes. But where’s the fun in that? Besides, I think I learned more doing it this way. Happily, there’s a nice paper. By Chris Bishop, which explains clearly what’s going on, and gives you the update equations. For example:. Which involves taking the expected value of. You are...
Tracking a finger | James Hensman's Weblog
https://jameshensman.wordpress.com/2009/05/15/tracking-a-finger
James Hensman’s Weblog. May 15, 2009. 8212; jameshensman @ 11:29 am. Right Having broken my avi file into pngs, how do I keep track of an object in the vid? Check this out to see what I mean:. I’m not sure what the tapping of the finger is about (at the start of the vid), but I have data from the experiment which I’d like to correlate to the position of the finger on the rig. the idea is to follow that black blob. Having broken the vid into png images, I loaded them into python using PIL:. It might make ...
ipython %bg coolness | James Hensman's Weblog
https://jameshensman.wordpress.com/2009/01/29/ipython-bg-coolness
James Hensman’s Weblog. January 29, 2009. 8212; jameshensman @ 3:17 pm. In ipython, I just found the magic function ‘%bg’, or background. If you want to run a long process, but keep the window active, this threads the task and stores the result for you to pick up later. e.g. In [1]: from numpy import matlib as ml. In [2]: %bg ml.rand(2,2). Starting job # 0 in a separate thread. In [3]: %bg ml.zeros(3). Starting job # 1 in a separate thread. In [4]: jobs[0].result. Matrix([ 0.97556473, 0.67794221],.
Making and Breaking Videos into pngs | James Hensman's Weblog
https://jameshensman.wordpress.com/2009/05/15/making-and-breaking-videos-into-pngs
James Hensman’s Weblog. May 15, 2009. Making and Breaking Videos into pngs. 8212; jameshensman @ 10:59 am. I’ve got some videos that I’d like to do a little bit of processing on. nothing spectacular, I just want to track a black blob. Now, ffmpeg is a phenomenal beast. It can re-scale videos, re-encode them, crop them, and all kinds of other things that I’m not interested in. The command I’ve used to break a avi file into pngs is:. Ffmpeg -i ./tmp/%03d.png. Leave a Comment ». Leave a Reply Cancel reply.
February | 2009 | James Hensman's Weblog
https://jameshensman.wordpress.com/2009/02
James Hensman’s Weblog. February 12, 2009. 8212; jameshensman @ 9:41 am. I’ve been fiddling around in python, implementing a Variational Bayesian Principal Component Analysis (VBPCA) algorithm. It’s true, I could do this happily in vibes. But where’s the fun in that? Besides, I think I learned more doing it this way. Happily, there’s a nice paper. By Chris Bishop, which explains clearly what’s going on, and gives you the update equations. For example:. Which involves taking the expected value of. Third q...
Some notes on Factor Analysis (FA) | James Hensman's Weblog
https://jameshensman.wordpress.com/2009/01/28/some-notes-on-factor-analysis-fa
James Hensman’s Weblog. January 28, 2009. Some notes on Factor Analysis (FA). 8212; jameshensman @ 9:21 am. Factor analysis is a statistical technique which can uncover (linear) latent structures in a set of data. It is very similar to PCA, but with a different noise model. The model conssits of a set of observed parameters. This is your collected data), some latent paramenters. There exists a noisy linear map. From the latent space to the observed variables:. Is a diagonal matrix. It seems Ghahramani wa...
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all models are wrong | — but some are useful
All models are wrong. 8212; but some are useful. Going both ways in R -. May 19, 2010. In response to my griping on #Rstats, asks “What’s wrong with an arrow going both ways! 8221; In R one can perfom assignment three ways:. I’m pretty sure all these things are equivalent. The only subtlety I’ve noticed so far is that to set default options in function definitions you have to use `=`. Finding homologous probes using biomaRt. May 14, 2010. I asked a question on the superb biostar stackexchange site. I...
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