mikelove.github.io

Michael I Love

Michaelisaiahlove at gmail dot com. I use statistical models to infer biologically meaningful patterns from high-throughput sequencing data, and develop open-source statistical software for the Bioconductor Project. One of my main research efforts is in authoring and maintaining the DESeq2 package. For statistical analysis of RNA-seq experiments. In addition, I have collaborated with the authors and developers of the Salmon. Describing the new bias correction methods has been posted to bioRxiv (8/2016).

http://mikelove.github.io/

OVERVIEW OF mikelove.github.io

TRAFFIC RANK

>1,000,000

REVIEWS

0

PAGES IN THIS WEBSITE

3

LINKS TO THIS WEBSITE

CONTACTS

ADDRESSES

SOCIAL LINKS

ONLINE SINCE

WEBSITE DETAILS

SEO

PAGES

SIMILAR SITES

TRAFFIC RANK FOR MIKELOVE.GITHUB.IO

TODAY'S RATING

>1,000,000

TRAFFIC RANK - AVERAGE PER MONTH

BEST MONTH

October

AVERAGE PER DAY Of THE WEEK

HIGHEST TRAFFIC ON

Monday

TRAFFIC BY CITY

Sign up

CUSTOMER REVIEWS

Average Rating: 3.9 out of 5 with 14 reviews

5 star

8

4 star

1

3 star

3

2 star

0

1 star

2

Hey there! Start your review of mikelove.github.io

AVERAGE USER RATING

Write a Review

WEBSITE PREVIEW

LOAD TIME

1.2 seconds

CONTACTS AT MIKELOVE.GITHUB.IO

ADD CONTACT

Login

TO VIEW CONTACTS

Remove Contacts

FOR PRIVACY ISSUES

CONTENT

PAGES IN
THIS WEBSITE

3

SSL

EXTERNAL LINKS

21

SITE IP

151.101.40.133

LOAD TIME

1.219 sec

SCORE

6.2

PAGE TITLE

Michael I Love | mikelove.github.io Reviews

<META> DESCRIPTION

Michaelisaiahlove at gmail dot com. I use statistical models to infer biologically meaningful patterns from high-throughput sequencing data, and develop open-source statistical software for the Bioconductor Project. One of my main research efforts is in authoring and maintaining the DESeq2 package. For statistical analysis of RNA-seq experiments. In addition, I have collaborated with the authors and developers of the Salmon. Describing the new bias correction methods has been posted to bioRxiv (8/2016).

<META> KEYWORDS

1 michael i love

2 papers

3 software

4 teaching

5 assistant professor

6 department of biostatistics

7 department of genetics

8 unc chapel hill

9 mikelove

10 google scholar

CONTENT

Page content here

KEYWORDS ON PAGE

michael i love,papers,software,teaching,assistant professor,department of biostatistics,department of genetics,unc chapel hill,mikelove,google scholar,research,background,latest work,and software

SERVER

GitHub.com

CONTENT-TYPE

utf-8

GOOGLE PREVIEW

Michael I Love | mikelove.github.io Reviews

https://mikelove.github.io

Michaelisaiahlove at gmail dot com. I use statistical models to infer biologically meaningful patterns from high-throughput sequencing data, and develop open-source statistical software for the Bioconductor Project. One of my main research efforts is in authoring and maintaining the DESeq2 package. For statistical analysis of RNA-seq experiments. In addition, I have collaborated with the authors and developers of the Salmon. Describing the new bias correction methods has been posted to bioRxiv (8/2016).

INTERNAL PAGES

mikelove.github.io

1

Teaching

http://mikelove.github.io/pages/teaching.html

Data Analysis for the Life Sciences. By Rafael A. Irizarry and Michael I. Love. Self-published on Leanpub. Compiled from class notes and exercises for PH525x. Teaching fellow, HarvardX PH525x Series. Biomedical Data Science (8 classes), Feb-Jun 2014 ( 4000 students participating), Feb-Jun 2015 ( 7000 students participating). Co-instructor for. Statistics and R for the Life Sciences. Introduction to Linear Models and Matrix Algebra. Advanced Statistics for the Life Sciences.

2

Papers

http://mikelove.github.io/pages/papers.html

Rob Patro, Geet Duggal, Michael I. Love. Rafael A. Irizarry, Carl Kingsford. Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference. AA. March 2017. doi: 10.1038/nmeth.4197. Michael I. Love. November 2016. NAR HTML. Leonardo Collado Torres, Abhinav Nellore, Alyssa C. Frazee, Christopher Wilks, Michael I. Love. Ben Langmead, Rafael A. Irizarry, Jeffrey Leek, Andrew E. Jaffe. Flexible expressed region analysis for RNA-seq with derfinder. AA. Mark D. Ro...

3

Software

http://mikelove.github.io/pages/software.html

Bioc) Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution. Collaboration with Simon Anders and Wolfgang Huber (EMBL Heidelberg). Bioc) Modeling and correcting fragment sequence bias for RNA-seq transcript abundance estimation. Collaboration with Rafael Irizarry (DFCI Boston). Bioc) This package provides infrastructure for parallel computations distributed ‘by file’ or ‘by rang...

UPGRADE TO PREMIUM TO VIEW 0 MORE

TOTAL PAGES IN THIS WEBSITE

3

LINKS TO THIS WEBSITE

mikelove.wordpress.com

Binomial GLM for ratios of read counts – Mike Love’s blog

https://mikelove.wordpress.com/2013/09/02/binomial-glm-for-ratios-of-read-counts

Mike Love’s blog. Binomial GLM for ratios of read counts. For certain sequencing experiments (e.g. methylation data), one might end up with a ratio of read counts at a certain location satisfying a given property (e.g. ‘is methylated’) and want to test if this ratio is significantly associated with a given variable, x. Here is a bit of code for using the glm() function in R with the binomial distribution with weights representing the covering reads. September 2, 2013. Leave a Reply Cancel reply. Postdoct...

mikelove.wordpress.com

Jacob and Monod – Mike Love’s blog

https://mikelove.wordpress.com/2013/09/08/jacob-and-monod

Mike Love’s blog. The original gene regulation diagram? J Mol Biol. 1961 Jun;3:318-56. Genetic regulatory mechanisms in the synthesis of proteins. JACOB F, MONOD J. September 8, 2013. 2 thoughts on “Jacob and Monod”. October 6, 2013 at 3:55 pm. Do you take questions? I don’t think it’s poisson since I’m not counting mutations over time or space it’s just the number of mutations at one point in time. Any guidance is appreciated. November 7, 2013 at 11:42 am. Leave a Reply Cancel reply. Postdoctoral Fellow...

mikelove.wordpress.com

How to check your simple definition of p-value – Mike Love’s blog

https://mikelove.wordpress.com/2014/10/16/how-to-check-your-simple-definition-of-p-value

Mike Love’s blog. How to check your simple definition of p-value. I just read Andrew Gelman’s post about an article with his name on it starting with an inaccurate definition of p-value. I sympathize with all parties. Journalists and editors are just trying to reduce technical terms by presenting layperson definitions. Earlier this year I caught a similar inaccurate definition. A simple rule for testing if your definition is wrong:. P-value is the probability that a result is due to random chance. Where ...

mikelove.wordpress.com

Empirical Bayes and the James-Stein rule – Mike Love’s blog

https://mikelove.wordpress.com/2013/11/07/empirical-bayes

Mike Love’s blog. Empirical Bayes and the James-Stein rule. Suppose we observe 300 individual estimates. Now if we assume. The James-Stein rule gives an estimator for. Below is code for a little RStudio script to see how changing the balance of variance between data y and the variance of the means changes the amount of optimal shrinkage. For more info, read the paper referenced below! It uses the RStudio’s manipulate library: info on that. November 7, 2013. November 19, 2013. November 19, 2013 at 4:09 pm.

support.bioconductor.org

User: Michael Love

https://support.bioconductor.org/u/5822

Diams; 9.5k. 3 years, 7 months ago. M* * * * * * * * @gmail.com. I'm an Assistant Professor in the Department of Biostatistics at UNC Chapel Hill. My main Bioconductor involvement is to maintain these software packages:. Posts by Michael Love. Prev • 1,725 results • page 1 of 173 •. Answer: A: Using tximport to read in data from sailfish experiment. Can you run traceback() after the error and report the output? Written 9 hours ago by Michael Love. Diams; 9.5k. Comment: C: DESeq2 coefficient of variation.

mikelove.wordpress.com

Plot hclust with colored labels – Mike Love’s blog

https://mikelove.wordpress.com/2013/10/16/plot-hclust-with-colored-labels

Mike Love’s blog. Plot hclust with colored labels. Again I find myself trying to plot a cluster dendrogram with colored labels. With some insight from this post. I came up with the following function:. October 16, 2013. October 16, 2013. 1 thought on “Plot hclust with colored labels”. November 22, 2013 at 8:51 am. Or just, ColorDendrogram from sparcl package. Leave a Reply Cancel reply. Enter your comment here. Fill in your details below or click an icon to log in:. Address never made public). Get every ...

simplystatistics.org

Courses · Simply Statistics

http://simplystatistics.org/courses

Follow us on twitter @simplystats. A statistics blog by Rafa Irizarry, Roger Peng, and Jeff Leek. The authors of this blog have created a large number of massive online open courses that are always available for you to take online. Data Science Specialization on Coursera. This is a series of 9 classes that teach the entire data science process. The classes were built by Jeff Leek. You can sign up through Coursera. Data analysis for life sciences. Genomic Data Science Specialization on Coursera.

mikelove.wordpress.com

Plotting hclust – Mike Love’s blog

https://mikelove.wordpress.com/2012/08/08/plotting-hclust

Mike Love’s blog. After many years I’ve finally worked out the x and y coordinates of the points in plot.hclust. Hang - 0.07 hc - hclust(dist) plot(hc) pt.heights - c(hc$height[hc$merge[,1] 0],hc$height[hc$merge[,2] 0])[order(-1 * c(hc$merge[,1][hc$merge[,1] 0],hc$merge[,2][hc$merge[,2] 0]) ] points(1:length(hc$order), pt.heights[hc$order] - hang). August 8, 2012. Leave a Reply Cancel reply. Enter your comment here. Fill in your details below or click an icon to log in:. Address never made public). Get e...

mikelove.wordpress.com

Points and line ranges – Mike Love’s blog

https://mikelove.wordpress.com/2013/01/13/points-and-line-ranges

Mike Love’s blog. Points and line ranges. Two ways of plotting a grid of points and line ranges. I’m coming around to ggplot2. I recommend skimming the first few chapters of the book to understand what is going on – but it only takes about 30 min or so to understand enough to make basic plots. January 13, 2013. January 17, 2013. Leave a Reply Cancel reply. Enter your comment here. Fill in your details below or click an icon to log in:. Address never made public). Notify me of new comments via email.

mikelove.wordpress.com

More hclust madness – Mike Love’s blog

https://mikelove.wordpress.com/2013/10/24/more-hclust-madness

Mike Love’s blog. X - replicate(10,sample(0:1,100,TRUE) library(gplots) hc - hclust(dist(t(x) ) y - sweep(x,2,2 (ncol(x)-order(hc$order) ,*) z - x[order(rowSums(y) ,] heatmap.2(z, trace=none, key=FALSE, Rowv=FALSE,labRow=FALSE, Colv=as.dendrogram(hc), dendrogram=column, scale=none,col=c(grey,blue), lwid=c(2,10). October 24, 2013. October 24, 2013. Leave a Reply Cancel reply. Enter your comment here. Fill in your details below or click an icon to log in:. Address never made public). Points and line ranges.

UPGRADE TO PREMIUM TO VIEW 11 MORE

TOTAL LINKS TO THIS WEBSITE

21

SOCIAL ENGAGEMENT

mikelove

OTHER SITES

mikelovdal.com

Welcome mikelovdal.com - BlueHost.com

Web Hosting - courtesy of www.bluehost.com.

mikelove-du-59.skyrock.com

Blog de mikelove-du-59 - love-2-twa-a-jamais - Skyrock.com

Mot de passe :. J'ai oublié mon mot de passe. Mise à jour :. Abonne-toi à mon blog! N'oublie pas que les propos injurieux, racistes, etc. sont interdits par les conditions générales d'utilisation de Skyrock et que tu peux être identifié par ton adresse internet (67.219.144.114) si quelqu'un porte plainte. Ou poster avec :. Retape dans le champ ci-dessous la suite de chiffres et de lettres qui apparaissent dans le cadre ci-contre. Posté le mardi 06 novembre 2007 11:28. Ou poster avec :. Ou poster avec :.

mikelove.biz

Custom Paint Specialties

Welcome To Our Web-Site. Specializing in Custom Paint and Bodywork. Visit our picture galleries. Click on a picture below to enlarge it for more detail). Please browse through our pictures. We have been in the Custom Paint Business for over 25 years, for more information on us and our business look at the About Us page. Harley Davidson Dealer Program available, follow the link below for more information. We have limited the number of pictures on some pages to make them load faster. 1600 W. Acoma #10.

mikelove.com

Mike Love | Homepage

St Augustine, FL. Learn more about and buy Mike's solo and Beach Boys albums. Exclusive Meet-and-Greet with the legendary Mike Love. Feb 9, 2018. The Beach Boys Are Better Than the Beatles. Jan 9, 2018. Mike Love – Amoeba Hollywood – December 6th – 8pm. Dec 2, 2017. The Beach Boys’ Mike Love: C’mon World and Unleash the Love. Nov 17, 2017. Pre-Order Unleash The Love Today! Oct 27, 2017. BEACH BOYS’ MIKE LOVE TO RELEASE NEW DOUBLE ALBUM UNLEASH THE LOVE. Oct 5, 2017. Jul 4, 2017. Jun 30, 2017. May 25, 2017.

mikelove.eventsbot.com

MIKE LOVE PERFORMS LIVE AT LIV FRIDAYS

MIKE LOVE PERFORMS LIVE AT LIV FRIDAYS. Fri, Nov 05, 2010 at 8:00 pm to Sat, Nov 06, 2010 at 3:00 am EST. WASHINGTON, DISTRICT OF COLUMBIA. Eventsbot eb612340362 mike love.jpg. Date, Time and Location. Fri, Nov 05, 2010 at 8:00 PM EST. Sat, Nov 06, 2010 at 3:00 AM EST. 2001 11TH ST NW. WASHINGTON, DISTRICT OF COLUMBIA. Add to My Calendar. Fri, Nov 05, 2010 at 8:00 pm to Sat, Nov 06, 2010 at 3:00 am. Ticket not available/not found. CATCH THE #DMV'S HOTTEST NEW ARTIST MIKE LOVE PERFORMING LIVE. GMU and CU ...

mikelove.github.io

Michael I Love

Michaelisaiahlove at gmail dot com. I use statistical models to infer biologically meaningful patterns from high-throughput sequencing data, and develop open-source statistical software for the Bioconductor Project. One of my main research efforts is in authoring and maintaining the DESeq2 package. For statistical analysis of RNA-seq experiments. In addition, I have collaborated with the authors and developers of the Salmon. Describing the new bias correction methods has been posted to bioRxiv (8/2016).

mikelove.jackwhite.com

Mike Love - Jack White Real Estate

To Buy or Rent. Moving Checklist for Buyers. Utilities and Local Services. Why List with Jack White. Top 10 Seller Tips. The Seller's List of 24 Easy Fix-Ups. Moving Checklist for Sellers. Close" class="pull-left" More Options. Want to search on the go. Download my app. Want to search on the go. Download my app. Want to search on the go. Download my app. Want to search on the go. Download my app. A Little Bit About Me. There are no listings to show at this time. Why create an account? Anchorage, AK 99503.

mikelove.skyrock.com

Blog de mikelove - mike love - Skyrock.com

Mot de passe :. J'ai oublié mon mot de passe. Plus d'actions ▼. S'abonner à mon blog. Création : 27/02/2012 à 20:03. Mise à jour : 16/03/2012 à 17:19. N'oublie pas que les propos injurieux, racistes, etc. sont interdits par les conditions générales d'utilisation de Skyrock et que tu peux être identifié par ton adresse internet (54.145.69.42) si quelqu'un porte plainte. Ou poster avec :. Retape dans le champ ci-dessous la suite de chiffres et de lettres qui apparaissent dans le cadre ci-contre.

mikelove.wordpress.com

Mike Love’s blog

Mike Love’s blog. I was asked recently on Twitter about my thoughts on DESeq2 and edgeR and which tool is better. My reply was:. Perform similarly. I recommend people read papers and decide themselves. Mike Love (@mikelove) September 9, 2016. But then I was asked to elaborate more so here goes:. I think DESeq2 and edgeR are both good methods for gene-level DE, as is limma-voom. I would say that the difference in dispersion shrinkage didn’t make a huge difference in performance compared to edgeR, as...

mikelove091.skyrock.com

Blog de mikelove091 - Blog de mikelove091 - Skyrock.com

Mot de passe :. J'ai oublié mon mot de passe. Congo, République du. Mise à jour :. Abonne-toi à mon blog! Ajouter cette vidéo à mon blog. Selon moi je trouve la vie se comme un jeux, parce que si tu as déraillé ta parti est game over, se comme sa avec la vie selon moi Kemai le cauchemar de l'u.p.n a plus les mondes. Ou poster avec :. Retape dans le champ ci-dessous la suite de chiffres et de lettres qui apparaissent dans le cadre ci-contre. Posté le jeudi 07 mai 2009 14:56. Poster sur mon blog.

mikelove132.deviantart.com

mikelove132 - DeviantArt

Window.devicePixelRatio*screen.width 'x' window.devicePixelRatio*screen.height) :(screen.width 'x' screen.height) ; this.removeAttribute('onclick')" class="mi". Window.devicePixelRatio*screen.width 'x' window.devicePixelRatio*screen.height) :(screen.width 'x' screen.height) ; this.removeAttribute('onclick')". Join DeviantArt for FREE. Forgot Password or Username? Deviant for 1 Year. This deviant's full pageview. December 19, 1997. Last Visit: 5 hours ago. By moving, adding and personalizing widgets.