blog.gcollet.fr
Vie quotidienne - I'm stuck here
http://blog.gcollet.fr/category/Vie-quotidienne
Aller à la recherche. Samedi 28 septembre 2013. Par Guillaume Collet le samedi 28 septembre 2013, 16:57. Je ne serai pas disponible pendant les deux prochaines semaines. Donc pause ;-). Mais j'aurai plein de trucs à raconter en revenant. Lundi 2 septembre 2013. Par Guillaume Collet le lundi 2 septembre 2013, 09:01. Je reprends ce blog après deux longues années, une tentative avortée de blog en anglais, un post-doc en région parisienne et un retour à Rennes. Je suis désormais dans l'équipe Dyliss. Comme ç...
rmcsoftwareinc.wordpress.com
Richard Casey | Richard Casey
https://rmcsoftwareinc.wordpress.com/author/rmcsoftwareinc
Software Project Manager – HPC/Bioinformatics. This Blog is Moving! Posted by Richard Casey. Asymp; Leave a comment. For those of you who are subscribed to and following my blogsite, it is moving to a new website effective immediately. The new website is:. For continuity, all of my previous blogs have been migrated to the new site. And I will post all new blogs to the site as well. I hope you join me there! Genome Assembly without the RAM. Posted by Richard Casey. Asymp; 3 Comments. As an alternative to ...
nucleotid.es
Assembler Images · nucleotides · genome assembler benchmarking
http://nucleotid.es/assemblers
The SPAdes assembler is developed by Algorithmic Biology Lab at the St. Petersburg Academic University. No source code repository available. No mailing list available. IDBA (iterative De Bruijn Graph De Novo Assembler) is developed by the Bioinfomatics Research Group in the department of Computer Science at the University of Hong Kong. The velvet optimiser tools tests multiple kmer values for velvet and returns the best assembly. This assembler is developed by the Victorian Bioinformatics Consortium.
rmcsoftwareinc.wordpress.com
Genome Assembly without the RAM | Richard Casey
https://rmcsoftwareinc.wordpress.com/2015/02/04/genome-assembly-without-the-ram
Software Project Manager – HPC/Bioinformatics. Genome Assembly without the RAM. Posted by Richard Casey. Asymp; 3 Comments. De novo assembly of Next Generation Sequencing (NGS). Assembling genomes with little memory. Is the construction of genomes without reference to existing known genomes. There is a wide variety of de novo assembly tools. From experience we know that some assemblers require several hundred GB (gigabytes) up to 1 TB (terabyte) of RAM,. Minia source code is available here. And the NCBI ...
genomeinformatics.uni-due.de
Vorlesung “Computational Omics” | Genome Informatics
http://genomeinformatics.uni-due.de/lehre/vorlesung-computational-omics
Vorlesung “Algorithmen auf Sequenzen”. Vorlesung “Algorithmische Bioinformatik”. Vorlesung “Computational Omics”. Seminar “Aktuelle Themen der Bioinformatik”. Vorlesung “Computational Omics”. Inhalt (Vorlesungskommentar, Stand: April 2015). Massenspektrometrie: Zusammensetzung eines Moleküls aus Masseninformationen. Ionenmobilitätspektrometrie in der Metabolomik. 8211; Problematik) umzugehen. Prüfungstermin mit Prof. Rahmann per e-mail absprechen. Mündliche Prüfung von ca. 25 Minuten Dauer. German) ̶...
dartergenomics.org
Tallapoosa Darter Genome - Darter Genomics
http://www.dartergenomics.org/tallapoosa-darter-genome
Current State of Annotation. This page describes the details of Tallapoosa darter genome sequencing and assembly. From these runs the following sets of sequence data were obtained:. Library 1: 14,119,092 individual paired-end reads. Library 2: 8, 897,578. Library 3: 29,312,578. Total: 52,929,248. Of up to 250 nucleotides each. These reads add up to about 13 billion nucleotides of DNA sequence. Since percid fishes have a genome size of about 1 billion nucleotides ( animal genome size database. Genomic fra...
