minisatellites.u-psud.fr
MLVA - Multiple Loci VNTR Analysis databases and softwareMulti Locus VNTR Analysis (MLVA) databases and software
http://minisatellites.u-psud.fr/
Multi Locus VNTR Analysis (MLVA) databases and software
http://minisatellites.u-psud.fr/
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MLVA - Multiple Loci VNTR Analysis databases and software | minisatellites.u-psud.fr Reviews
https://minisatellites.u-psud.fr
Multi Locus VNTR Analysis (MLVA) databases and software
minisatellites.u-psud.fr
Utilities
http://minisatellites.u-psud.fr/Tools.php
Genomes, Polymorphism and Minisatellites. With a focus on Molecular Epidemiology using Tandem Repeats. Blast in the microbial tandem repeats database. Inversion complementation of a nucleotide sequence. Link to publications supplementary data. Support site for MLVA databases. Sequence files conversion at EBI. Bacterial genomes at NCBI. MLVA in Bordeaux, France. MLVA in Bilthoven, the Netherlands. MLVA in Paris, France. MLVA for E. faecium. In Utrecht, the Netherlands. In La Guadeloupe, France.
Human minisatellites
http://minisatellites.u-psud.fr/GPMS/human_minisat.htm
Predicting Human Minisatellites Polymorphism ( Denoeud et al. Links to supplementary data:. Analysis of distribution in the human, pig, and rat genomes points toward a general subtelomeric origin of minisatellite structures ( Amarger et al. Genomics, 1998, 52, p62-71. Localisation of minisatellites cloned from total genomic libraries (in french).
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MLVABank - Microbes genotyping
http://mlva.u-psud.fr/mlvav4/genotyping/index.php
View to Staphylococcus aureus. Query to Staphylococcus aureus. Brucella suis 2015 Duvnjak. C burnetii 2007 Orsay. C burnetii 2014 Hungary. C burnetii 2014 Nijmegen. C burnetii in silico. C burnetii published others. Hungarian Brucella suis bv 2 database. Salmonella Typhi India 66 strains. Streptococcus pyogenes in silico. View to Yersinia pestis2004. Query to Yersinia pestis2004. See list of private and. We wellcome feedback and suggestions for improvements. Current version is version [ 5.0. General info...
GPMS news
http://mlva.u-psud.fr/GPMSnews
MLVA and CRISPR WebServices. On the whole CNRS Web. This site is not maintained. This site is discontinued. Last updates june 2009, as part of the MLVA training course. Please go to our main page, http:/ minisatellites.u-psud.fr. Garcia-Yoldi et al. evaluate in this report published in "Vaccine" the stability of the tandem repeat loci used in the MLVA16 assay, by typing a collection of field isolates of the vaccine strain Rev1. Validation of a new MLVA in 3 countries, UK, IT, FR.
CRISPRs Finder online
http://crispr.i2bc.paris-saclay.fr/Server
Cas Genes at TIGR. CRISPR plasmids for academic lab research at Addgene. CRISPR evolution ( Yersinia pestis. CRISPRs found ( *. Number of convincing CRISPR structures (number of genomes with such CRISPR). Welcome to the CRISPRs web service. This page enables the easy detection of CRISPRs. In user-submitted sequence data (allows sequences up to 67,000,000 bp). Your data must be a DNA sequence (or many DNA sequences) in FASTA. Download sample1 Aquifex VF5. Or sample2 P. aeruginosa PA14. Submit your Own data.
MLVAnet support site
http://mlva.u-psud.fr/MLVAnet
State of the art. State of the art. On the whole CNRS Web. Additional reading specific for genotyping based upon tandem repeats polymorphisms: a general MLVA review (2006), by Vergnaud and Pourcel (book chapter) a short description of the MLVA web ressources (2008), by Grissa et al. What is this site useful for? What is a csv data file and how can I make one? The standard (.). What you need to know to get started. The primary purpose of this website is to provide general assistance to the use of the Micr...
bacteriophages.igmors.u-psud.fr
The Orsay Phage database
http://bacteriophages.igmors.u-psud.fr/phage_cards
Welcome to the Orsay phage web site. This site is dedicated to the description and analysis of bacteriophages characterized by the GPMS laboratory in Orsay. Version 1.0 released september 30th 2013. Return to main page.
CRISPRcompar
http://crispr.i2bc.paris-saclay.fr/CRISPRcompar
The CRISPRcompar program automatically recovers from CRISPRdb all members of a genus containing a CRISPR and proposes to compare each of them using an alphabetic list of strains harbouring a CRISPR (alternatively, all strains from a given genus can be selected at once using the "strain taxonomy browser"). To compare unpublished sequences and genomes, a private database on the model of CRISPRdb must first be created (use your email adress and a 6 digits password).
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MLVA - Multiple Loci VNTR Analysis databases and software
With a focus on Viruses of Microbes and Molecular Epidemiology of bacterial pathogens. CRISPRdb: database for CRISPRs. CRISPRCasFinder: direct sequence search for CRISPR arrays and Cas genes. CRISPRfinder: direct sequence search for CRISPR. CRISPRcompar : comparing CRISPRs in different strains. CRISPRtionary : creating or using a dictionary of spacers. The Microorganisms Tandem Repeats Database. Old ressources, may be still useful:. Previous version The Microorganisms Tandem Repeats Database.
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