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MINNOU.CCHMC.ORG

MINNOU protein trans-membrane domain prediction server

MINNOU is a server for sequence-based trans-membrane domain and relative lipid accessibility prediction.

http://minnou.cchmc.org/

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MINNOU protein trans-membrane domain prediction server | minnou.cchmc.org Reviews
<META>
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MINNOU is a server for sequence-based trans-membrane domain and relative lipid accessibility prediction.
<META>
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1 transmembrane domain prediction
2 transmembrane region prediction
3 transmembrane prediction
4 membrane protein prediction
5 relative lipid accessibility
6 alpha-helical transmembrane protein
7 beta-barrel transmembrane protein
8
9 coupons
10 reviews
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minnou,embrane protein i,de n,tificatio n,with ou,documentation,statistics,credits,news,about us,contacts,target protein,sequence name,complex pse,complex ce,chain ce,model,e mail address optional,downloads,ncbi psi blast,and swiss prot,databases,refresh
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MINNOU protein trans-membrane domain prediction server | minnou.cchmc.org Reviews

https://minnou.cchmc.org

MINNOU is a server for sequence-based trans-membrane domain and relative lipid accessibility prediction.

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minnou.cchmc.org minnou.cchmc.org
1

MINNOU: general information

http://minnou.cchmc.org/minnou_doc.html

The MINNOU Server: General Information. The MINNOU server can be used for predicting trans-membrane domains. Its stand-alone version is also available. Click here. To go to download page. Please, use the following reference:. B Cao, A. Porollo, R. Adamczak, M. Jarrell, J. Meller, Enhanced Recognition of Protein Transmembrane Domains with Prediction-based Structural Profiles. Bioinformatics, 2006, 22:303-9. Back to the MINNOU server home page.

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aplab.cchmc.org aplab.cchmc.org

AP eLab - Methodological Projects

http://aplab.cchmc.org/projects_method.html

E-Laboratory of Aleksey Porollo. These 1D predictions are often the first step to gaining insight into the 3D structure and function of a protein. Accurate prediction of relative solvent accessibilities of amino acid residues in proteins may be used to facilitate protein structure prediction and functional annotation. Toward that goal, we have developed a novel method (SABLE) for improved prediction of relative solvent accessibilities (RSA) ( Ref 1. Trans-membrane domains ( Ref 3. Adamczak R, Porollo A, ...

aramemnon.botanik.uni-koeln.de aramemnon.botanik.uni-koeln.de

Resource

http://aramemnon.botanik.uni-koeln.de/resrc_view.ep

Enter protein name or keyword. TM spans (alpha helix). TM spans (beta barrel). Prediction of transmembrane spans (alpha helix). Human Genome Center, Institute of Medical Science. Department of Electronic Information System Engineering. Hungarian Academy of Sciences, Budapest. Childrens Hospital Research Foundation, Cincinnati. Network Sequence Protein Analysis. Pole Bioinformatique Lyonnais, Lyon. University of Washington, Seattle. Department of Cell Biology and Biophysics. Stockholm University, Stockholm.

molbiol-tools.ca molbiol-tools.ca

Online Analysis Tools - Protein Secondary Structure

http://www.molbiol-tools.ca/Protein_secondary_structure.htm

Secondary structure prediction - is a HNN (Hidden Neural Network) secondary structure prediction program that uses the PSI-BLAST algorithm to produce a PSSM for the input sequence, which it then uses to perform its prediction. ( Reference:. K Lin et al. 2005. Bioinformatics 21:. Technical University of Berlin, Germany). 1D Protein Structure Prediction Server. For a metasite linked to a wide range of protein sequence analysis and structure predictions online programs, I recommend PredictProtein. Predictio...

canoz.com canoz.com

BENCHMARK OF MEMBRANE HELIX PREDICTIONS FROM SEQUENCE

http://www.canoz.com/benchmark/benchmark.pl

BENCHMARK OF MEMBRANE HELIX PREDICTIONS FROM SEQUENCE. This benchmark server allows you to compare membrane helix prediction and topology prediction methods that have made their predictions based on amino acid sequence. If you want to compare methods :. 1 Choose the methods you want to compare and/or upload your own predictions. 2 Select the benchmark dataset (standard or personalized). 3 Specify the benchmark criteria. 1 Choose the methods you want to compare and/or upload your own predictions:. 2 Selec...

aramemnon.uni-koeln.de aramemnon.uni-koeln.de

Resource

http://aramemnon.uni-koeln.de/resrc_view.ep

Enter protein name or keyword. TM spans (alpha helix). TM spans (beta barrel). Prediction of transmembrane spans (alpha helix). Human Genome Center, Institute of Medical Science. Department of Electronic Information System Engineering. Hungarian Academy of Sciences, Budapest. Childrens Hospital Research Foundation, Cincinnati. Network Sequence Protein Analysis. Pole Bioinformatique Lyonnais, Lyon. University of Washington, Seattle. Department of Cell Biology and Biophysics. Stockholm University, Stockholm.

bmi.cchmc.org bmi.cchmc.org

Computational Cluster | Research IT Core Services

https://bmi.cchmc.org/resources/clusters/computational-cluster

Installing OpenNX in Mac OS X Lion. Running software the easy way. Mac, Linux and Solaris Support. Biomaterial Tracking and Management (BTM) Core. BMI maintains a Linux-based computational cluster that is accessible from outside the Cincinnati Children's network. The cluster currently has over 700 processing cores and is heterogeneous with both large-memory SMPs as well as low-cost processing nodes. The cluster is Linux-based and the preferred method of access is either SSH or NX. An annual storage charg...

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MINNOU protein trans-membrane domain prediction server

T explicit use of hydropathy profiles and alignments. Sequence-based prediction of relative lipid accessibility. Amino acid sequence (using one letter codes). Perform relative lipid accessibility prediction using. Add SABLE prediction results to e-mail message. Stand-alone version of MINNOU. Stand-alone version of SABLE. T explicit use of hydropathy profiles and alignments. Sequence-based prediction of relative lipid accessibility.

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