MIRBASE.ORG

miRBase

MiRNA count: 38589 entries. Search by miRNA name or keyword. Download published miRNA data. Latest miRBase blog posts. March 12, 2018). After repeated and unreasonable delay, miRBase 22 is finally released. As you might expect with such a long gap, the number of sequences in the database has jumped significantly — by over a third. The vast majority of the increase comes from new microRNA annotations in species not previous represented in the database. Indeed, there [.]. July 3, 2014). Provides miRNA gene...

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MiRNA count: 38589 entries. Search by miRNA name or keyword. Download published miRNA data. Latest miRBase blog posts. March 12, 2018). After repeated and unreasonable delay, miRBase 22 is finally released. As you might expect with such a long gap, the number of sequences in the database has jumped significantly — by over a third. The vast majority of the increase comes from new microRNA annotations in species not previous represented in the database. Indeed, there [.]. July 3, 2014). Provides miRNA gene...

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miRBase | mirbase.org Reviews

https://mirbase.org

MiRNA count: 38589 entries. Search by miRNA name or keyword. Download published miRNA data. Latest miRBase blog posts. March 12, 2018). After repeated and unreasonable delay, miRBase 22 is finally released. As you might expect with such a long gap, the number of sequences in the database has jumped significantly — by over a third. The vast majority of the increase comes from new microRNA annotations in species not previous represented in the database. Indeed, there [.]. July 3, 2014). Provides miRNA gene...

INTERNAL PAGES

mirbase.org

1

miRBase

http://www.mirbase.org/ftp.shtml

Go to the FTP site. Release notes - read these first! All published miRNA data in EMBL format. Fasta format sequences of all miRNA hairpins. Fasta format sequences of all mature miRNA sequences. Changes between the last release and this. List of entries that have been removed from the database. Family classification of miRNA hairpin sequences. Email mirbase@manchester.ac.uk.

2

miRBase blog - miRBase news and views

http://www.mirbase.org/blog

MiRBase news and views. High confidence miRNA set available for miRBase 21. We briefly held off from releasing the set of “high confidence” miRNAs. For miRBase 21, because of a last-gasp bug. Those data are now available, tagged with the label “high confidence” on the entry pages, and for download on the FTP site. A few sequences labelled as high confidence in miRBase 20 have disappeared in the miRBase 21 set, some because of the aforementioned bug. July 3, 2014. MiRBase 21 finally arrives. Whereas GRCh3...

3

High confidence miRNA set available for miRBase 21 – miRBase blog

http://www.mirbase.org/blog/2014/07/high-confidence-mirna-set-available-for-mirbase-21

MiRBase news and views. High confidence miRNA set available for miRBase 21. We briefly held off from releasing the set of “high confidence” miRNAs. For miRBase 21, because of a last-gasp bug. Those data are now available, tagged with the label “high confidence” on the entry pages, and for download on the FTP site. A few sequences labelled as high confidence in miRBase 20 have disappeared in the miRBase 21 set, some because of the aforementioned bug. July 3, 2014. Feed for comments on this post. Sam on mi...

4

miRBase::Sequences

http://www.mirbase.org/help/mailinglist.shtml

MiRNA announcement mailing list. The miRNA mailing list keeps you up-to-date with releases of miRBase. The traffic should be very low - only one mail every month or so. Send a mail to listserv@listserv.manchester.ac.uk. With "subscribe mirbase-announce" in the body of the message. Send a mail to listserv@listserv.manchester.ac.uk. With "signoff mirbase-announce" in the body of the message. Email mirbase@manchester.ac.uk.

5

miRBase

http://www.mirbase.org/index.shtml

MiRNA count: 28645 entries. Search by miRNA name or keyword. Download published miRNA data. Latest miRBase blog posts. July 3, 2014). High confidence miRNA set available for miRBase 21. June 26, 2014). MiRBase 21 finally arrives. MiRBase: the microRNA database. MiRBase provides the following services:. Is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the databas...

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rnacentral.org

miRBase Expert Database

http://www.rnacentral.org/expert-database/mirbase

Your query is too short. Your query is too long. Is a database of published miRNA sequences and annotations that provides a centralised system for assigning names to miRNA genes. Distinct sequences from 27. Organisms contributed to RNAcentral. The shortest sequence has 16. Nucleotides, the longest 1,451. The average length is 41. 21 (a subset of species). Browse all miRBase sequences. MiRBase: integrating microRNA annotation and deep-sequencing data. Click the graph to search by sequence length. Result&#...

mirworks.in

Mirworks :: IPR

http://mirworks.in/datasets.php

Literary work for Smell Detection Agent based Optimization Algorithm , No. 55325/2014-CO/L. Literary work for "Association Rule Mining Using Treap", No. 1293/2015-CO/L (filed). Literary work for "Multi dimensional honey bee foraging algorithm based on optimal energy consumption", No. 5500/2015-CO/L. Literary work for "Mixed Species Particles Flocking Algorithm for Multi Objective Optimization", No. 3788/2016-CO/L (filed). Discovered microRNA, published in miRBase. Hsa-mir-5095, Accession No. MI0018001.

chomine.boku.ac.at

CHOmine: Data Categories

https://chomine.boku.ac.at/chomine/dataCategories.do

An integrated database for Cricetulus griseus. This page lists all data sources loaded along with the date the data was downloaded and related publication. NOTE: All external links open in a new window. Genome annotation for C. gricetulus. Brinkrolf et al - PubMed: 23929341. Genome annotation for C. gricetulus. Lewis et al - PubMed: 23873082. Chinese hamster ovary - K1 cell line. Genome annotation for CHO-K1 cell line. Xu et al - PubMed: 21804562. UniProt Consortium - PubMed: 17142230.

yichuanliu.blogspot.com

Yichuan's work journal: November 2010

http://yichuanliu.blogspot.com/2010_11_01_archive.html

The scentific works of Yichuan for Bioinformatics/Computational Biology. Tuesday, November 30, 2010. Alternative splicing discovery from RNA-seq. After tons of different method, either .wig file from TOPHAT or .pileup from SAMTOOLs will solve the problem. Interesting thing is the data in these two kind of files are not consist with each other, however, the UCSC genome brower use .wig as the visuzalition. Some example of new alternative splicing:. Subscribe to: Posts (Atom). View my complete profile.

pseudomap.mbc.nctu.edu.tw

PseudoMap - Resource of exploring esiRNA-mediated mechanism of pseudogenes

http://pseudomap.mbc.nctu.edu.tw/php/tutorial.php

A resource of exploring esiRNA-mediated mechanism of pseudogenes. The tutorial of pseudoMap. Statistic data of pseudoMap. Download of gene information, sequence and expression profiles. Send E-mail to us. Current state of pseudoMap. Link to related DBs. Browse of miRNA Regulator. Details of miRNA Regulator. Red-line represented TPG: link to all of TPG-derived esiRNAs. Blue-line represented esiRNA: link to single esiRNA. Link to TPG (click red-line). Gene Information: Transcriptions of TPG. Institute of B...

misolrna.org

MiSolRNA

http://www.misolrna.org/help

Fork me on GitHub. The "search tab" allows to explore the database using different queries: BIN. Eg 1A following the tomato genome dissection proposed by Eshed and Zamir, Euphytica 79: 175-179, 1994), miRNA name. Eg ath-MIR1456a as proposed at the miRBASE www.mirbase.org. Gene (UNIGENE e.g. SGN-U562666 or BAC e.g. C00HBa0008K08.1 following the SGN nomenclature) or Keyword/s. Which will search using all alpha-numerical fields within the three selectable database fields: QTL. Names or Hit Definition. Resul...

narrykim.org

RNA Biology: Useful Websites

http://www.narrykim.org/en/links

RNA Biology: Useful Websites. Institute for Basic Science and Seoul National University. School of Biological Sciences. SNU Health Service Center. Nat Struc Mol Biol. Creative Research Initiative Program (창의 연구단). KOREAN: Universities and Institutions. Center for RNA Research. Narry Kim Laboratory - 2003-2015 Seoul National University, Republic of Korea.

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mirbase.net

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mirbase.org

miRBase

MiRNA count: 38589 entries. Search by miRNA name or keyword. Download published miRNA data. Latest miRBase blog posts. March 12, 2018). After repeated and unreasonable delay, miRBase 22 is finally released. As you might expect with such a long gap, the number of sequences in the database has jumped significantly — by over a third. The vast majority of the increase comes from new microRNA annotations in species not previous represented in the database. Indeed, there [.]. July 3, 2014). Provides miRNA gene...

mirbasetracker.org

miRBase Tracker

Keep track of the annotation of your miRNA of interest throughout time. Enter a precursor/mature miRNA name, sequence or accession number and get an overview of how the nomenclature, sequence and other annotation changed in the different releases of the miRBase database. Compare different releases of the miRBase database. Specify two releases and find out which miRNA records were added, removed or changed in annotation. Bandicoot papillomatosis carcinomatosis virus type 1. Human immunodeficiency virus 1.

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Mir BasÄ±mevi

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