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miRcode - transcriptome-wide microRNA target prediction including lncRNAs

Transcriptome-wide microRNA target prediction including lncRNAs. MiRcode 11 (June 2012) based on: UCSC GRCh37/hg19, GENCODE 11 transcripts, Multiz 46 species, TargetScan6 families. MiRcode provides "whole transcriptome" human microRNA target predictions based on the comprehensive GENCODE gene annotation. Page, and the FAQ. Answers many questions. Please cite the miRcode paper. If this resource is useful in your research. Do an interactive search. Sites in the UCSC browser, or download.

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miRcode - transcriptome-wide microRNA target prediction including lncRNAs | mircode.org Reviews

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Transcriptome-wide microRNA target prediction including lncRNAs. MiRcode 11 (June 2012) based on: UCSC GRCh37/hg19, GENCODE 11 transcripts, Multiz 46 species, TargetScan6 families. MiRcode provides whole transcriptome human microRNA target predictions based on the comprehensive GENCODE gene annotation. Page, and the FAQ. Answers many questions. Please cite the miRcode paper. If this resource is useful in your research. Do an interactive search. Sites in the UCSC browser, or download.

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1 data info

2 browse

3 download

4 larsson lab

5 introduction

6 below browse

7 for local use

8 feature

9 target site search

10 gene symbol/accession

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data info,browse,download,larsson lab,introduction,below browse,for local use,feature,target site search,gene symbol/accession,microrna family,highly conserved families,gene class,lncrna all,lncrna intergenic,lncrna coding overlap,coding,pseudogene

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miRcode - transcriptome-wide microRNA target prediction including lncRNAs | mircode.org Reviews

https://mircode.org

Transcriptome-wide microRNA target prediction including lncRNAs. MiRcode 11 (June 2012) based on: UCSC GRCh37/hg19, GENCODE 11 transcripts, Multiz 46 species, TargetScan6 families. MiRcode provides "whole transcriptome" human microRNA target predictions based on the comprehensive GENCODE gene annotation. Page, and the FAQ. Answers many questions. Please cite the miRcode paper. If this resource is useful in your research. Do an interactive search. Sites in the UCSC browser, or download.

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mircode.org

1

miRcode - transcriptome-wide microRNA target prediction including lncRNAs

http://www.mircode.org/faq.php

Transcriptome-wide microRNA target prediction including lncRNAs. MiRcode 11 (June 2012) based on: UCSC GRCh37/hg19, GENCODE 11 transcripts, Multiz 46 species, TargetScan6 families. Tab-delimited text files format and other frequent questions:. Predictions are based on GENCODE transripts/genes (see info. Page For easy-of-use, we classify these into several categories, such as intergenic lncRNAs. MicroRNA family names follows the TargetScan nomenclature, as these are widely used. The repeat column indicate...

2

miRcode - transcriptome-wide microRNA target prediction including lncRNAs

http://www.mircode.org/info.php

Transcriptome-wide microRNA target prediction including lncRNAs. MiRcode 11 (June 2012) based on: UCSC GRCh37/hg19, GENCODE 11 transcripts, Multiz 46 species, TargetScan6 families. The current miRcode release is based on the hg19 genome assembly and relies on data sources listed below. Transcripts in the GENCODE 11. Ambigously mapped transcripts are excluded, leading to subtle differences compared to official counts. Having no coding spliceforms, and mature transcripts 200 nt. As these are widely adopted.

3

miRcode - transcriptome-wide microRNA target prediction including lncRNAs

http://www.mircode.org/download.php

Transcriptome-wide microRNA target prediction including lncRNAs. MiRcode 11 (June 2012) based on: UCSC GRCh37/hg19, GENCODE 11 transcripts, Multiz 46 species, TargetScan6 families. Tab-delimited files, for local computation or manual inspection ( 100 MB uncompressed):. Highly conserved microRNA families. Note: these show weak expression overall and are only marginally enriched in 3'UTRs). More details about the file format are found in the FAQ. Highly conserved microRNA families.

4

miRcode - transcriptome-wide microRNA target prediction including lncRNAs

http://www.mircode.org/index.php

Transcriptome-wide microRNA target prediction including lncRNAs. MiRcode 11 (June 2012) based on: UCSC GRCh37/hg19, GENCODE 11 transcripts, Multiz 46 species, TargetScan6 families. MiRcode provides "whole transcriptome" human microRNA target predictions based on the comprehensive GENCODE gene annotation. Page, and the FAQ. Answers many questions. Please cite the miRcode paper. If this resource is useful in your research. Do an interactive search. Sites in the UCSC browser, or download.

5

miRcode - transcriptome-wide microRNA target prediction including lncRNAs

http://www.mircode.org/browse.php

Transcriptome-wide microRNA target prediction including lncRNAs. MiRcode 11 (June 2012) based on: UCSC GRCh37/hg19, GENCODE 11 transcripts, Multiz 46 species, TargetScan6 families. Browse predicted sites in genomic regions. Links below will launch the UCSC browser, with custom tracks showing miRcode predicted target sites. You can also click the genomic coordinates returned by the search. Function to reach these views. Dark shading indicates high site conservation. Highly conserved microRNA families.

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miRcode - transcriptome-wide microRNA target prediction including lncRNAs

Transcriptome-wide microRNA target prediction including lncRNAs. MiRcode 11 (June 2012) based on: UCSC GRCh37/hg19, GENCODE 11 transcripts, Multiz 46 species, TargetScan6 families. MiRcode provides "whole transcriptome" human microRNA target predictions based on the comprehensive GENCODE gene annotation. Page, and the FAQ. Answers many questions. Please cite the miRcode paper. If this resource is useful in your research. Do an interactive search. Sites in the UCSC browser, or download.

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