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mitchell-lab.org

The Mitchell Lab

The Mitchell group at the University of Wisconsin - Madison develops tools for the computational study of macromolecular interactions. This includes software for molecular docking, methods for analyzing molecular shape and shape specificity, and knowledge-based methods for predicting protein interaction hot spots. August 11, 2015. Http:/ www.mitchell-lab.org. University of Wisconsin - Madison.

http://www.mitchell-lab.org/

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CONTACTS AT MITCHELL-LAB.ORG

J

480 L●●●●●n Dr.

Ma●●on , WI, 53703

US

1.60●●●●5853
mi●●●●●●@math.wisc.edu

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JC Mitchell

433 B●●●●●k Dr.

Ma●●on , WI, 53703

US

1.60●●●●5853
mi●●●●●●@biochem.wisc.edu

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University of Wisconsin - Madison

JC Mitchell

433 B●●●●●k Dr.

Ma●●on , WI, 53703

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1.60●●●●5853
ad●●●@mitchell-lab.org

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The Mitchell Lab | mitchell-lab.org Reviews
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The Mitchell group at the University of Wisconsin - Madison develops tools for the computational study of macromolecular interactions. This includes software for molecular docking, methods for analyzing molecular shape and shape specificity, and knowledge-based methods for predicting protein interaction hot spots. August 11, 2015. Http:/ www.mitchell-lab.org. University of Wisconsin - Madison.
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2 publications
3 software tools
4 kfc server
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6 fade and padre
7 rotations code
8 cudesa
9 cubezern
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The Mitchell Lab | mitchell-lab.org Reviews

https://mitchell-lab.org

The Mitchell group at the University of Wisconsin - Madison develops tools for the computational study of macromolecular interactions. This includes software for molecular docking, methods for analyzing molecular shape and shape specificity, and knowledge-based methods for predicting protein interaction hot spots. August 11, 2015. Http:/ www.mitchell-lab.org. University of Wisconsin - Madison.

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kfc.mitchell-lab.org kfc.mitchell-lab.org

KFC2 Server - Protein Interface Hot Spot Prediction

Mitchell Lab - KFC2 Server. The visual content of this site is heavily reliant on JavaScript. We suggest navigating our site with a JavaScript-enabled browser, such as Firefox. Also, please be sure you have the Sun Java Engine 1.4 or later installed. Visit java.com. To download the latest version. The original KFC Server. The KFC2 Server manual can be found here. If you use the KFC2 Server, please cite:. S J Darnell, D. Page, and J. C. Mitchell. 68(4): 813-823, 2007. X Zhu, and J. C. Mitchell.

cubezern.mitchell-lab.org cubezern.mitchell-lab.org

The Mitchell Lab

The Mitchell group at the University of Wisconsin - Madison develops tools for the computational study of macromolecular interactions. This includes software for molecular docking, methods for analyzing molecular shape and shape specificity, and knowledge-based methods for predicting protein interaction hot spots. August 16, 2015. Http:/ www.mitchell-lab.org. University of Wisconsin - Madison.

ice.mitchell-lab.org ice.mitchell-lab.org

The Mitchell Lab

The Mitchell group at the University of Wisconsin - Madison develops tools for the computational study of macromolecular interactions. This includes software for molecular docking, methods for analyzing molecular shape and shape specificity, and knowledge-based methods for predicting protein interaction hot spots. August 16, 2015. Http:/ www.mitchell-lab.org. University of Wisconsin - Madison.

dbsi.mitchell-lab.org dbsi.mitchell-lab.org

The Mitchell Lab

The Mitchell group at the University of Wisconsin - Madison develops tools for the computational study of macromolecular interactions. This includes software for molecular docking, methods for analyzing molecular shape and shape specificity, and knowledge-based methods for predicting protein interaction hot spots. August 16, 2015. Http:/ www.mitchell-lab.org. University of Wisconsin - Madison.

rotations.mitchell-lab.org rotations.mitchell-lab.org

The Mitchell Lab

Thank you for your interest in the SOI/ISOI code. The SOI codes are described in the following paper:. J C Mitchell. Discrete Uniform Sampling of Rotation Groups Using Orthogonal Images. SIAM Journal of Scientific Computing. 30(1):525-547, 2007. View Abstract. This archive contains the code for uniform deterministic sampling on SO(3). The ISOI codes are described in the following paper:. November 2009. View Abstract. S2 sequence.tar.gz. The output is parametrized by (x,y,z) coordinates in 3D. This code p...

LINKS TO THIS WEBSITE

mitchell-lab.biochem.wisc.edu mitchell-lab.biochem.wisc.edu

Computational Biochemistry Seminar

https://mitchell-lab.biochem.wisc.edu/SEMINAR

DBSI DNA Binding Site. DBSI DNA Binding Site. Organized by Alessandro Senes. Email join-compbiochem@lists.wisc.edu. To join our mailing list. Sep 9, 4pm. Sep 16, 4pm. Mathematical and computational methods for analyzing biochemical interaction networks. Sep 23, 4pm. Frontiers in conformational mapping of molecular machines. Sep 30, 4pm. Predicting 3-dimensional protein structures at atomic-level accuracy. Oct 7, 4pm. Allosteric interactions between sensory domains and gates in voltage-gated ion channels.

mitchell-lab.biochem.wisc.edu mitchell-lab.biochem.wisc.edu

The Mitchell Lab

https://mitchell-lab.biochem.wisc.edu/CUBEZERN/index.php

DBSI DNA Binding Site. DBSI DNA Binding Site. CubeZern Low Resolution Approximation of cryoEM data. Zernike polynomials have been widely used in the description and shape retrieval of 3D objects. These orthonormal polynomials allow for efficient description and reconstruction of objects that can be scaled to fit within the unit ball. We extend this class of polynomials to 3D rectangular solid regions. This archive contains the code for running CubeZern. March 11, 2017. Https:/ www.mitchell-lab.org.

mitchell-lab.biochem.wisc.edu mitchell-lab.biochem.wisc.edu

The Mitchell Lab

https://mitchell-lab.biochem.wisc.edu/ICE/index.php

DBSI DNA Binding Site. DBSI DNA Binding Site. Improved Conformational Entropy (ICE) Design. The Improved Conformation Entropy (ICE) package looks for amino acid substitutions that reduce the conformational entropy of a protein, with the goal of increasing its rigidity and thermal stability. This archive contains the code for running ICE. RM Bannen, V Suresh, SJ Wright, GN Phillips, and JC Mitchell (2008) Bioinformatics 24(20): 2339-2343. March 11, 2017. Https:/ www.mitchell-lab.org.

mitchell-lab.biochem.wisc.edu mitchell-lab.biochem.wisc.edu

The Mitchell Lab

https://mitchell-lab.biochem.wisc.edu/WRITING/index.php

DBSI DNA Binding Site. DBSI DNA Binding Site. Science Writing and Presentation Materials. Science Writing and Presentation Materials. These materials are collected from a scientific writing workshop designed by Madeline Fisher. They include writing tips, presentation slides, and exercises. In addition, tips for designing scientific presentations were developed by Adam Steinberg. These materials may be used and shared freely provided their source is acknowledged. Writing the results section. March 11, 2017.

mitchell-lab.biochem.wisc.edu mitchell-lab.biochem.wisc.edu

The Mitchell Lab

https://mitchell-lab.biochem.wisc.edu/FADEPADRE/index.php

DBSI DNA Binding Site. DBSI DNA Binding Site. FADE and PADRE Software. Fast Atomic Density Evaluator (FADE). Pairwise Atomic Density Reverse Engineering (PADRE). The Fast Atomic Density Evaluator (FADE) and Pairwise Atomic Density Reverse Engineering (PADRE) programs calculated packing densities and features of interest on protein surfaces, such as crevices, grooves and protrusions. FADE and PADRE are. This archive contains the code for running FADE and PADRE. March 11, 2017.

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The Mitchell Lab

DBSI DNA Binding Site. DBSI DNA Binding Site. The Mitchell group at the University of Wisconsin - Madison develops tools for the computational study of macromolecular interactions. This includes software for molecular docking, methods for analyzing molecular shape and shape specificity, and knowledge-based methods for predicting protein interaction hot spots. January 12, 2017. Https:/ www.mitchell-lab.org. University of Wisconsin - Madison.

mitchell-lab.org mitchell-lab.org

The Mitchell Lab

The Mitchell group at the University of Wisconsin - Madison develops tools for the computational study of macromolecular interactions. This includes software for molecular docking, methods for analyzing molecular shape and shape specificity, and knowledge-based methods for predicting protein interaction hot spots. August 11, 2015. Http:/ www.mitchell-lab.org. University of Wisconsin - Madison.

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