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SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international research community.

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Groups | molecular-modelling.ch Reviews

https://molecular-modelling.ch

SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international research community.

INTERNAL PAGES

molecular-modelling.ch molecular-modelling.ch
1

Groups

http://www.molecular-modelling.ch/team.php

Skip to main navigation. Skip to 1st column. Skip to 2nd column. How to find us. Core and Computing Facilities. SIB PhD Training Network. Modelling / Data Mining. Logos, Photos, Videos. Fact Sheets, Brochures. Olivier Michielin (Group Leader). 41 21 692 4053. Vincent Zoete (Associate Group Leader). 41 21 692 4082. Prasad Chaskar (PhD student). 41 21 692 4088. 41 21 692 4081. Antoine Daina (Senior Scientist). 41 21 692 4086. 41 21 692 5929. Dennis Haake (PhD student). 41 21 692 4081. 41 21 692 59 69.

2

Groups

http://www.molecular-modelling.ch/news.php

Skip to main navigation. Skip to 1st column. Skip to 2nd column. How to find us. Core and Computing Facilities. SIB PhD Training Network. Modelling / Data Mining. Logos, Photos, Videos. Fact Sheets, Brochures. Back to the Top.

3

Groups

http://www.molecular-modelling.ch/projects.php

Skip to main navigation. Skip to 1st column. Skip to 2nd column. How to find us. Core and Computing Facilities. SIB PhD Training Network. Modelling / Data Mining. Logos, Photos, Videos. Fact Sheets, Brochures. The Molecular Modelling group studies mechanisms of molecular recognition, in particular protein-protein or protein-small ligand interactions. The group develops and employs molecular modelling techniques such as homology, molecular dynamics, docking and free energy simulations. Most effort...

4

Groups

http://www.molecular-modelling.ch/pubs-2015.php

Skip to main navigation. Skip to 1st column. Skip to 2nd column. How to find us. Core and Computing Facilities. SIB PhD Training Network. Modelling / Data Mining. Logos, Photos, Videos. Fact Sheets, Brochures. Röhrig UF, Majjigapu SR, Vogel P, Zoete V, Michielin O. Challenges in the Discovery of Indoleamine 2,3-Dioxygenase 1 (IDO1) Inhibitors. J Med Chem. 2015, 58(24):9421-37. Gfeller D, Zoete V. Protein homology reveals new targets for bioactive small molecules. Bioinformatics. 2015, 31(16):2721-7.

5

Groups

http://www.molecular-modelling.ch/index.php

Skip to main navigation. Skip to 1st column. Skip to 2nd column. How to find us. Core and Computing Facilities. SIB PhD Training Network. Modelling / Data Mining. Logos, Photos, Videos. Fact Sheets, Brochures. The SIB Molecular Modelling Group. Group Leader: Olivier Michielin. The Molecular Modelling group (MMG) studies mechanisms of molecular recognition, in particular protein-protein or protein-small ligand interactions. The group develops and employs molecular modelling techniques such as homology...

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ns300183.ovh.net ns300183.ovh.net

SwissSidechain - A database of non-natural sidechains

http://ns300183.ovh.net/FAQ.php

In order to avoid security-related warning messages when switching to secured connection, you may want either to:. Confirm the exception on the next page, or. Import our CA key. In your web browser. Swiss Institute of Bioinformatics. What is an amino acid? What is a sidechain? What are non-natural sidechains? What is the difference between L and D amino acids? How were the rotamer libraries generated in SwissSidechain? What kind of data can I find in the SwissSidechain database? Where can I obtain PyMOL?

ns300183.ovh.net ns300183.ovh.net

SwissSidechain - A database of non-natural sidechains

http://ns300183.ovh.net/visualization/chimera.php

In order to avoid security-related warning messages when switching to secured connection, you may want either to:. Confirm the exception on the next page, or. Import our CA key. In your web browser. Swiss Institute of Bioinformatics. SwissSidechain - UCSF Chimera Module. This module enables users to mutate any residue of a PDB structure into one of the non-natural L- or D-sidechains of the SwissSidechain database. If you do not have UCSF Chimera, it can be obtained here. Installation (Chimera 1.5 ).

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SwissSidechain - A database of non-natural sidechains

http://www.swisssidechain.ch/visualization/chimera.php

In order to avoid security-related warning messages when switching to secured connection, you may want either to:. Confirm the exception on the next page, or. Import our CA key. In your web browser. Swiss Institute of Bioinformatics. SwissSidechain - UCSF Chimera Module. This module enables users to mutate any residue of a PDB structure into one of the non-natural L- or D-sidechains of the SwissSidechain database. If you do not have UCSF Chimera, it can be obtained here. Installation (Chimera 1.5 ).

swisssidechain.ch swisssidechain.ch

SwissSidechain - A database of non-natural sidechains

http://www.swisssidechain.ch/visualization.php

In order to avoid security-related warning messages when switching to secured connection, you may want either to:. Confirm the exception on the next page, or. Import our CA key. In your web browser. Swiss Institute of Bioinformatics. SwissSidechain - Visualization Plugins. Swiss Institute of Bioinformatics.

swisssidechain.ch swisssidechain.ch

SwissSidechain - A database of non-natural sidechains

http://www.swisssidechain.ch/visualization/pymol.php

In order to avoid security-related warning messages when switching to secured connection, you may want either to:. Confirm the exception on the next page, or. Import our CA key. In your web browser. Swiss Institute of Bioinformatics. SwissSidechain - PyMOL Plugin. This plugin enables you to mutate any residue of a PDB structure into one of the non-natural L- or D-sidechains of the SwissSidechain database. If you do not have PyMOL, it can be obtained here. In a directory of your choice. Copy PySwissSidech...

swisssidechain.ch swisssidechain.ch

SwissSidechain - A database of non-natural sidechains

http://www.swisssidechain.ch/D_residues.php

In order to avoid security-related warning messages when switching to secured connection, you may want either to:. Confirm the exception on the next page, or. Import our CA key. In your web browser. Swiss Institute of Bioinformatics. SwissSidechain - D-amino acids. Here, we provide all data to work with both natural and non-natural D-amino acids. All D-amino acids can be accessed from this page. By selecting the corresponding L-form. We note that depending on the backbone dihedral angles (&#966 and &#968...

swisssidechain.ch swisssidechain.ch

SwissSidechain - A database of non-natural sidechains

http://www.swisssidechain.ch/license.php

In order to avoid security-related warning messages when switching to secured connection, you may want either to:. Confirm the exception on the next page, or. Import our CA key. In your web browser. Swiss Institute of Bioinformatics. Access to these database is free for academic use. Access by commercial entities is subject to the licensing conditions outlined in the User Notice ( PDF. And the SIB License ( PDF. Please read the SIB Database Legal Disclaimer. Swiss Institute of Bioinformatics.

swisssidechain.ch swisssidechain.ch

SwissSidechain - A database of non-natural sidechains

http://www.swisssidechain.ch/FAQ.php

In order to avoid security-related warning messages when switching to secured connection, you may want either to:. Confirm the exception on the next page, or. Import our CA key. In your web browser. Swiss Institute of Bioinformatics. What is an amino acid? What is a sidechain? What are non-natural sidechains? What is the difference between L and D amino acids? How were the rotamer libraries generated in SwissSidechain? What kind of data can I find in the SwissSidechain database? Where can I obtain PyMOL?

swisssidechain.ch swisssidechain.ch

SwissSidechain - A database of non-natural sidechains

http://www.swisssidechain.ch/MD.php

In order to avoid security-related warning messages when switching to secured connection, you may want either to:. Confirm the exception on the next page, or. Import our CA key. In your web browser. Swiss Institute of Bioinformatics. SwissSidechain - Molecular Dynamics. You can find here topologies and parameters for molecular mechanics simulations with non-natural sidechains in GROMACS and CHARMM. Swiss Institute of Bioinformatics.

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X1f512; Group Wiki. X1f512; Cluster Resources. X1f512; Cluster Temperature. WELCOME TO THE WEBSITE OF THE. MOLECULAR MODELLING AND COMPUTATIONAL BIOPHYSICS GROUP. The Molecular Modelling and Computational Biophysics Group is focused in many research subjects intimatelly related with health sciences, taking advantage of an extensive know-how and expertise on molecular modelling techniques (comprising, but not limited to, Molecular Dynamics simulations and Quantum Mechanics Calculations). 351 234 247 254.

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Modelare moleculara

Allows the description of the structure and properties of molecular systems using verious computational techniques and numerical methods. Molecular modeling can start from simple molecular systems, with a small numer of atoms, and can reach to complex systems with thousands of atoms, such as those of interest in life sciences. The techniques used correspond to the size and complexity of the particular system, the approach varying from quantum. The molecular modeling research group.

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Groups

Skip to main navigation. Skip to 1st column. Skip to 2nd column. How to find us. Core and Computing Facilities. SIB PhD Training Network. Modelling / Data Mining. Logos, Photos, Videos. Fact Sheets, Brochures. The SIB Molecular Modelling Group. Group Leader: Olivier Michielin. The Molecular Modelling group (MMG) studies mechanisms of molecular recognition, in particular protein-protein or protein-small ligand interactions. The group develops and employs molecular modelling techniques such as homology...

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