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molecularfunk.org

mscook | Bio | Dev | Op

A Data Scientist focused on large biological datasets. A Programmer and Linux System Administrator. I am a core developer of computational pipelines and data management procedures for next generation sequencing data in the context of high performance computing (HPC) environments. Become a Software Carpentry Instructor [done]. Run a Software Carpentry Bootcamp [ in progress. Run South East Queensland Unseminars in Bioinformatics (SEQUB) [ in progress. Organise the 2015 HealthHack in Brisbane [ in progress.

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Mitchell Stanton-Cook

61 B●●●●a St

De●●on , Queensland, 4017

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Mitchell Stanton-Cook

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De●●on , Queensland, 4017

AU

61.4●●●●0280
m.●●●●●●●●●●●@gmail.com

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Mitchell Stanton-Cook

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De●●on , Queensland, 4017

AU

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mscook | Bio | Dev | Op | molecularfunk.org Reviews
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A Data Scientist focused on large biological datasets. A Programmer and Linux System Administrator. I am a core developer of computational pipelines and data management procedures for next generation sequencing data in the context of high performance computing (HPC) environments. Become a Software Carpentry Instructor [done]. Run a Software Carpentry Bootcamp [ in progress. Run South East Queensland Unseminars in Bioinformatics (SEQUB) [ in progress. Organise the 2015 HealthHack in Brisbane [ in progress.
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mscook | Bio | Dev | Op | molecularfunk.org Reviews

https://molecularfunk.org

A Data Scientist focused on large biological datasets. A Programmer and Linux System Administrator. I am a core developer of computational pipelines and data management procedures for next generation sequencing data in the context of high performance computing (HPC) environments. Become a Software Carpentry Instructor [done]. Run a Software Carpentry Bootcamp [ in progress. Run South East Queensland Unseminars in Bioinformatics (SEQUB) [ in progress. Organise the 2015 HealthHack in Brisbane [ in progress.

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happykhan.com happykhan.com

Happykhan.com

http://happykhan.com/index.html

Recognising assembly errors with REAPR. REAPR (Recognising Errors in Assemblies using Paired Reads) is a recent tool (published May 2013) released from the Berriman group at the the Sanger Institute. It's used to look for assembly errors in genome assemblies. There's a paper about it in Genome Biology. Using Pelican for websites. I recently migrated this webpage from Wordpress to Pelican. After talking to Mitchell Stanton-Cook. Shortest passwordless ssh tutorial, ever. Ssh-keygen -t dsa local. 2013 Nabil...

happykhan.com happykhan.com

compsci - Happykhan.com

http://happykhan.com/category/compsci.html

Using Pelican for websites. I recently migrated this webpage from Wordpress to Pelican. After talking to Mitchell Stanton-Cook. Essentially it is a python application that converts text files (as md or rst) into a webpage. So basically:. Using Pelican for websites # # # # # # # # # # # # # :date: 2013-08-16 :author: nabil :category: compsci :slug: pelican-blogs I recently migrated this webpage . Shortest passwordless ssh tutorial, ever. Ssh-keygen -t dsa local. Extra html and body tags in Pelican posts.

happykhan.com happykhan.com

Scripts & Programs - Happykhan.com

http://happykhan.com/pages/scripts-programs.html

I have a bunch on my GitHub I haven't written docs for. see http:/ github.com/happykhan. The BLAST Ring image Generator (BRIG) is a desktop application I developed for producing circular genome comparison figures. Read more about it here. The program is freely available at http:/ brig.sourceforge.net/. BRIG example output image of a simulated draft E. coli O157:H7 genome. The figure show BLAST comparisons of 28 other published (. Genomes against the simulated draft genome. From the EasyFig paper. Easyfig...

happykhan.com happykhan.com

Using Pelican for websites - Happykhan.com

http://happykhan.com/pelican-blogs.html

Using Pelican for websites. Using Pelican for websites. Sun 25 August 2013. I recently migrated this webpage from Wordpress to Pelican. After talking to Mitchell Stanton-Cook. Essentially it is a python application that converts text files (as md or rst) into a webpage. So basically:. Turns into this page you are looking at now, which is pure html css js with no backend database. There are some advantages:. Webpages are static html; loads fast and search engines love to read it. I didn't really like any ...

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mscook | Bio | Dev | Op

A Data Scientist focused on large biological datasets. A Programmer and Linux System Administrator. I am a core developer of computational pipelines and data management procedures for next generation sequencing data in the context of high performance computing (HPC) environments. Become a Software Carpentry Instructor [done]. Run a Software Carpentry Bootcamp [ in progress. Run South East Queensland Unseminars in Bioinformatics (SEQUB) [ in progress. Organise the 2015 HealthHack in Brisbane [ in progress.

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