dparks.wikidot.com
Publications - donovan parks
http://dparks.wikidot.com/publications
Exploring Microbial Community Diversity. McGill Object Detection Suite. Latest publications can be found on my Google scholar page. Soo RM, Skennerton CT, Sekiguchi Y Imelfort M, Parch SJ, Denis PG, Steen JA, Parks DH. Tyson GW, Hugenholtz P. 2014. An expanded genomic representation of the phylum cyanobacteria. Genome Biology and Evolution, 6, 1031-45. And Beiko RG. 2012. Measuring community similarity with phylogenetic networks. Molecular Biology and Evolution. MacDonald NJ, Parks DH. Robinson CJ, Sahl ...
wiki.hpcc.msu.edu
Bioinformatics Support at MSU - Bioinformatics Support - HPCC Wiki
https://wiki.hpcc.msu.edu/display/Bioinfo/Bioinformatics+Support+at+MSU
Bioinformatics Support at MSU. Link to this Page. Bioinformatics Support at MSU. Skip to end of metadata. Added by John B Johnston. Last edited by Patrick S Bills. On Nov 12, 2015 ( view change. Commented out all mention of VM services, becuase we don't seem to offer this. Go to start of metadata. Commonly used bioinformatics packages which may be used on the HPCC cluster. Offered through HPCC;. Vitual machine setups for BLAST, Galaxy, and the UCSC Genome Browser;. On utilizing HPCC resources;. Genome br...
petsocialnet.com
Services
http://www.petsocialnet.com/services.html
Could I help your start-up? I'm seeking opportunites to leverage my unique combination of business experience and scientific skills. If you have a good plan and are willing to offer equity share, then I'll help you develop your business and share the risk and rewards with you. Consulting services are provided to academic and commercial clients on an hourly paid or fixed price basis for well-defined deliverables. Rates are negotiated on a case-by-case basis. Maybe I can help- let's discuss.
biobuilds.org
BioBuilds.org » BioBuilds 2014.11
https://biobuilds.org/tools-in-biobuilds/biobuilds-2
Open Source informatics tools that Just Work. Support & Contracts. November 19, 2014. X86 64 Linux*, POWER8 Linux (Ubuntu). X86 64 Linux, x86 64 OS X, POWER8 (RHEL), POWER8 (Ubuntu). X86 64 Linux, x86 64 OS X, POWER8 (RHEL), POWER8 (Ubuntu). X86 64 Linux, POWER8 (RHEL), POWER8 (Ubuntu). X86 64 Linux, x86 64 OS X, POWER8 (RHEL), POWER8 (Ubuntu). X86 64 Linux, x86 64 OS X, POWER8 (RHEL), POWER8 (Ubuntu). X86 64 Linux, x86 64 OS X, POWER8 (RHEL), POWER8 (Ubuntu). X86 64 Linux, POWER8 (RHEL), POWER8 (Ubuntu).
brucellino.github.io
Week 18 projects update – Digital Dissident
http://brucellino.github.io/blog/2016/05/06/WorkUpdate
Week 18 (2016) work update. Week 18 projects update. What’s on my plate? CODE-RADE / AfricaGrid User Support. Here is a brief summary of the things I’ve been working on in the 16th week of 2016. A summary of the status of the sites can be seen below. For more details, see ARGO. Weekly status summary of the Africa-Arabia Regional Operations Centre. Sites in the Maghreb are working fine; DZ-01-ARN A/R is recovering from the above-mentioned bdii outage, whilst the two sites in Morocco are performing well.
sc.ddbj.nig.ac.jp
利用可能OSS
https://sc.ddbj.nig.ac.jp/index.php/ja-avail-oss
2016 年 11 月 05 日. T (thin) F (fat) M (medium) G (gpu) インストールノード. Edena2.1.1 linux64. Usr/local/pkg/edena/edena2.1.1 linux64. Usr/local/pkg/ncbi blast /ncbi-blast-2.3.0. Usr/local/pkg/ncbi blast /ncbi-blast-2.2.31. Usr/local/pkg/ncbi blast /ncbi-blast-2.2.30. Usr/local/pkg/ncbi blast /ncbi-blast-2.2.29. Usr/local/pkg/ncbi blast /ncbi-blast-2.2.25. Usr/local/pkg/ncbi cxx toolkit/12.0.0. Usr/local/pkg/ncbi cxx toolkit/9.0.0. Usr/local/pkg/ncbi cxx toolkit/7.0.0. Usr/local/pkg/ncbi toolkit/2.2.26. Usr/local/...
fonamental.cat
Software – fonamental
http://www.fonamental.cat/software
University of British Columbia. Institut de Ciències del Mar. Some stuff I use to develop my research.
h3abionet.org
16S rRNA diversity analysis
http://www.h3abionet.org/tools-and-resources/sops/16s-rrna-diversity-analysis
Pan African Bioinformatics Network for H3Africa. Scientific Advisory Board (SAB). African Bioinformatics Education Committee. Sickle Cell Ontology Working Group. SOPs and H3ABioNet Node accreditation. 16S rRNA diversity analysis. SOPs and H3ABioNet Node accreditation. Standard operating procedure for 16S rRNA diversity analysis. The procedure and tools are only recommendations and it is up to the user to evaluate what works best for their needs. Schematic workflow of the analysis. QC plots and stats.
scbi.uma.es
Software
http://www.scbi.uma.es/site/scbi/software
Supercomputing and Bioinnovation Center. Jump to main navigation and login. Jump to additional information. There are three kind of softwares, the supercomputing software is used through a terminal, with a queue system, you can read the manual at the Picasso documentation. The virtual software can be accessed through a virtual desktop, after doing login in this web page you will see a new menu item to access your virtual desktop. Used to functionally annotate genetic variants detected from diverse genomes.
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