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FunCoNet

Protein) Functional Connectivity Network. An integrated human kinase network. Protein physical interactions (PPIs), typically taking place in protein complexes, have proved to be useful to functionally associate proteins or genes in a broad range of studies. Additional physical interactions, such as enzyme-substrate, also inform on functional relationships. Furthermore, therapeutic agents such as small molecules or antibodies can be regarded as inducers of perturbations in cellular networks, thus...The i...

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FunCoNet | ms-isobar.org Reviews
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Protein) Functional Connectivity Network. An integrated human kinase network. Protein physical interactions (PPIs), typically taking place in protein complexes, have proved to be useful to functionally associate proteins or genes in a broad range of studies. Additional physical interactions, such as enzyme-substrate, also inform on functional relationships. Furthermore, therapeutic agents such as small molecules or antibodies can be regarded as inducers of perturbations in cellular networks, thus...The i...
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KEYWORDS
1 funconet
2 downloads
3 protein physical interactions ppi
4 experiments
5 kinase substrate interactions ksi
6 drug protein interactions dpi
7 current release
8 includes
9 487 protein kinases
10 sources intact
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funconet,downloads,protein physical interactions ppi,experiments,kinase substrate interactions ksi,drug protein interactions dpi,current release,includes,487 protein kinases,sources intact,mint,innatedb,hprd,matrixdb,reactome,corum,sources phosphositeplus
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FunCoNet | ms-isobar.org Reviews

https://ms-isobar.org

Protein) Functional Connectivity Network. An integrated human kinase network. Protein physical interactions (PPIs), typically taking place in protein complexes, have proved to be useful to functionally associate proteins or genes in a broad range of studies. Additional physical interactions, such as enzyme-substrate, also inform on functional relationships. Furthermore, therapeutic agents such as small molecules or antibodies can be regarded as inducers of perturbations in cellular networks, thus...The i...

LINKS TO THIS WEBSITE

bioinformatics.cemm.oeaw.ac.at bioinformatics.cemm.oeaw.ac.at

Downloads

http://bioinformatics.cemm.oeaw.ac.at/index.php/downloads-left

Jump to main navigation and login. Isobar R package for Analysis of quantitative proteomics data. Visit our new website at www.ms-isobar.org. Isobar provides methods for preprocessing, normalization, and report generation for the analysis of Proteomics data generated by Mass spectrometers using isobaric peptide tags, such as iTRAQ and TMT. General statistical modeling of data from protein relative expression isobaric tags. Journal of Proteome Research. Disruption of Functional Networks. Comparing the pro...

bioinformatics.cemm.oeaw.ac.at bioinformatics.cemm.oeaw.ac.at

Open positions

http://bioinformatics.cemm.oeaw.ac.at/index.php/open-positions

Jump to main navigation and login. CeMM 2013 PhD program. Is open for applications and offers several bioinformatics positions. check its web page. For more details and to apply. There are currently two projects available for a diploma thesis in our group. Analysis of quantitative proteomics data and posttranslational modification dynamics. Classically, proteomics uses either less precise label free methods, where the mass spectrometry analysis does not require any special sample preparation, or isotopic...

bioinformatics.cemm.oeaw.ac.at bioinformatics.cemm.oeaw.ac.at

Computational proteomics

http://bioinformatics.cemm.oeaw.ac.at/index.php/projects/24-comproteomics

Jump to main navigation and login. We address fundamental mass spectrometry (MS) data modeling problems such as. And the prediction of. From AP-MS data sets. We also develop and maintain an infrastructure to automatically process mass spectrometry data and to provide users with data analysis tools. Inference of protein complex architecture from AP-MS data. Or an ensemble of related protein complexes. At a global level. Named BI-MAP, complemented by. We showed that the BI-MAP tools can be applied from sma...

bioinformatics.cemm.oeaw.ac.at bioinformatics.cemm.oeaw.ac.at

Downloads

http://bioinformatics.cemm.oeaw.ac.at/index.php/downloads

Jump to main navigation and login. Isobar R package for Analysis of quantitative proteomics data. Visit our new website at www.ms-isobar.org. Isobar provides methods for preprocessing, normalization, and report generation for the analysis of Proteomics data generated by Mass spectrometers using isobaric peptide tags, such as iTRAQ and TMT. General statistical modeling of data from protein relative expression isobaric tags. Journal of Proteome Research. Disruption of Functional Networks. Comparing the pro...

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ms-isobar.org ms-isobar.org

FunCoNet

Protein) Functional Connectivity Network. An integrated human kinase network. Protein physical interactions (PPIs), typically taking place in protein complexes, have proved to be useful to functionally associate proteins or genes in a broad range of studies. Additional physical interactions, such as enzyme-substrate, also inform on functional relationships. Furthermore, therapeutic agents such as small molecules or antibodies can be regarded as inducers of perturbations in cellular networks, thus...The i...

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