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Welcome to msprime’s documentation! — msprime 0.4.1.dev0+ng71b83cb.d20161007 documentation | msprime.readthedocs.io Reviews
https://msprime.readthedocs.io
Tree Sequence File Format. Welcome to msprime’s documentation! Welcome to msprime’s documentation! This is the documentation for. A reimplementation of Hudson’s classical ms. Tree Sequence File Format. Provided by Read the Docs. On Read the Docs. Free document hosting provided by Read the Docs.
msprime.readthedocs.io
Index — msprime 0.4.1.dev0+ng71b83cb.d20161007 documentation
http://msprime.readthedocs.io/en/stable/genindex.html
Tree Sequence File Format. Breakpoints() (msprime.TreeSequence method). DemographyDebugger (class in msprime). Diffs() (msprime.TreeSequence method). Draw() (msprime.SparseTree method). Dump() (msprime.TreeSequence method). Get branch length() (msprime.SparseTree method). Get children() (msprime.SparseTree method). Get index() (msprime.SparseTree method). Get interval() (msprime.SparseTree method). Get length() (msprime.SparseTree method). Get mrca() (msprime.SparseTree method). Is leaf() (msprime.Sp...
API Documentation — msprime 0.4.1.dev0+ng71b83cb.d20161007 documentation
http://msprime.readthedocs.io/en/stable/api.html
Tree Sequence File Format. This is the API documentation for. And provides detailed information on the Python programming interface. See the Tutorial. For an introduction to using this API to run simulations and analyse the results. The simulation model in. Closely follows the classical. However, time is measured in generations rather than “coalescent units”. Internally the same simulation algorithm is used, but. All migration rates and growth rates are also per generation. Mutations occur in an infinite...
Tree Sequence File Format — msprime 0.4.1.dev0+ng71b83cb.d20161007 documentation
http://msprime.readthedocs.io/en/stable/file-format.html
Tree Sequence File Format. Tree Sequence File Format. Tree Sequence File Format. The correlated trees output by a coalescent simulation are stored very concisely in. As a sequence of coalescent records. To make this information as efficient and easy as possible to use, we store the data in a HDF5. Based file format. This page fully documents this format allowing efficient and convenient access to the genealogical data generated by. Outside of the native Python API. The root group contains one attributes,.
Introduction — msprime 0.4.1.dev0+ng71b83cb.d20161007 documentation
http://msprime.readthedocs.io/en/stable/introduction.html
Tree Sequence File Format. The primary goal of. Is to efficiently and conveniently generate coalescent trees for a sample under a range of evolutionary scenarios. The library is a reimplementation of Hudson’s seminal. Program, and aims to eventually reproduce all its functionality. In some important ways:. Both in terms of memory usage and simulation time. In fact,. Can easily simulate chromosome sized regions for hundreds of thousands of samples. Is primarily designed to be used through its Python API.
Command line interface — msprime 0.4.1.dev0+ng71b83cb.d20161007 documentation
http://msprime.readthedocs.io/en/stable/cli.html
Tree Sequence File Format. Two command-line applications are provided with. Program is an experimental interface for interacting with the library, and is a POSIX compliant command line interface. The mspms. Program is a fully- ms. Compatible interface. This is useful for those who wish to get started quickly with using the library, and also as a means of plugging. Into existing work flows. However, there is a substantial overhead involved in translating data from. Provides a command line interface to the.
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Welcome to msprime’s documentation! — msprime 0.4.1.dev0+ng71b83cb.d20161007 documentation
Tree Sequence File Format. Welcome to msprime’s documentation! Welcome to msprime’s documentation! This is the documentation for. A reimplementation of Hudson’s classical ms. Tree Sequence File Format. Provided by Read the Docs. On Read the Docs. Free document hosting provided by Read the Docs.
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