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MultiCoMP: Database of Multiple Conformations of Membrane Proteins

Database of Multiple Conformations of Membrane Proteins. 1 Search or Browse. 2 Select a reference protein. Is a database for exploring multiple conformations of membrane proteins. To find your protein of interest and view the multiple conformations that your protein is known to adopt. more. Browse the list of membrane proteins from the Stephen White Laboratory ( Membrane Proteins of Known 3D Structure. 62; Go to White's List Page. 62; Go to TC Tree Page. 62; Go to OPM Tree Page. Protein Cutoff X (%).

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MultiCoMP: Database of Multiple Conformations of Membrane Proteins | multicomp.nibiohn.go.jp Reviews

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Database of Multiple Conformations of Membrane Proteins. 1 Search or Browse. 2 Select a reference protein. Is a database for exploring multiple conformations of membrane proteins. To find your protein of interest and view the multiple conformations that your protein is known to adopt. more. Browse the list of membrane proteins from the Stephen White Laboratory ( Membrane Proteins of Known 3D Structure. 62; Go to White's List Page. 62; Go to TC Tree Page. 62; Go to OPM Tree Page. Protein Cutoff X (%).

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1 advanced search

2 white's list

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4 opm tree

5 multicomp

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10 browse tc tree

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MultiCoMP: Database of Multiple Conformations of Membrane Proteins | multicomp.nibiohn.go.jp Reviews

https://multicomp.nibiohn.go.jp

Database of Multiple Conformations of Membrane Proteins. 1 Search or Browse. 2 Select a reference protein. Is a database for exploring multiple conformations of membrane proteins. To find your protein of interest and view the multiple conformations that your protein is known to adopt. more. Browse the list of membrane proteins from the Stephen White Laboratory ( Membrane Proteins of Known 3D Structure. 62; Go to White's List Page. 62; Go to TC Tree Page. 62; Go to OPM Tree Page. Protein Cutoff X (%).

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multicomp.nibiohn.go.jp

1

MultiCoMP: Database of Multiple Conformations of Membrane Proteins

http://multicomp.nibiohn.go.jp/opm.html

Database of Multiple Conformations of Membrane Proteins. 1 Search or Browse. 2 Select a reference protein. 62; OPM (Orientations of Proteins in Membranes) database. Protein Cutoff X (%). Proteins having a percentage sequence identity (%) ≥ X with the reference protein are considered related and appear in the list on this page. Conformation Cutoff Y (Å). Structures with a Cα RMSD value (Å) Y are considered distinct conformations and clustered separately as Conformational Group 01, 02, and so on.

2

MultiCoMP: Database of Multiple Conformations of Membrane Proteins

http://multicomp.nibiohn.go.jp/white.html

Database of Multiple Conformations of Membrane Proteins. 1 Search or Browse. 2 Select a reference protein. 62; Membrane Proteins of Known 3D Structure. Protein Cutoff X (%). Proteins having a percentage sequence identity (%) ≥ X with the reference protein are considered related and appear in the list on this page. Conformation Cutoff Y (Å). Structures with a Cα RMSD value (Å) Y are considered distinct conformations and clustered separately as Conformational Group 01, 02, and so on.

3

MultiCoMP: Database of Multiple Conformations of Membrane Proteins

http://multicomp.nibiohn.go.jp/description.html

Database of Multiple Conformations of Membrane Proteins. 1 Search or Browse. 2 Select a reference protein. Clustering Procedure in MultiCoMP. The data stored in the database have been prepared using a two-stage clustering procedure: protein clustering and conformational clustering. The first clustering procedure is based on sequence similarity, and the second one is based on structural similarity. 1) We calculated the sequence similarity between all possible pairs of chains (one from protein 1 and the ot...

4

MultiCoMP: Database of Multiple Conformations of Membrane Proteins

http://multicomp.nibiohn.go.jp/tc.html

Database of Multiple Conformations of Membrane Proteins. 1 Search or Browse. 2 Select a reference protein. 62; TCDB (Transporter Classification Database). Protein Cutoff X (%). Proteins having a percentage sequence identity (%) ≥ X with the reference protein are considered related and appear in the list on this page. Conformation Cutoff Y (Å). Structures with a Cα RMSD value (Å) Y are considered distinct conformations and clustered separately as Conformational Group 01, 02, and so on.

5

MultiCoMP: Database of Multiple Conformations of Membrane Proteins

http://multicomp.nibiohn.go.jp/multicomp.html

Database of Multiple Conformations of Membrane Proteins. 1 Search or Browse. 2 Select a reference protein. 8595; Download in JSON format. Protein Cutoff X (%). Proteins having a percentage sequence identity (%) ≥ X with the reference protein are considered related and appear in the list on this page. Conformation Cutoff Y (Å). Structures with a Cα RMSD value (Å) Y are considered distinct conformations and clustered separately as Conformational Group 01, 02, and so on. This project was funded by JST-BIRD.

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For Prospective Postdocs | Mizuguchi Laboratory

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Appilcations of target prioritization. From molecular mechanisms of breast cancer cell growth to novel therapeutic strategies. Prediction of protein-protein interactions. What is target prioritization and why? What is target validation? Target discovery through network-based function prediction. Development of an international pharmaceutical innovation value chain for in silico drug discovery. Development of a novel method for modelling dynamic structures of membrane proteins. 14 Feburary, 2013. Sequence...

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Appilcations of target prioritization. From molecular mechanisms of breast cancer cell growth to novel therapeutic strategies. Prediction of protein-protein interactions. What is target prioritization and why? What is target validation? Target discovery through network-based function prediction. Development of an international pharmaceutical innovation value chain for in silico drug discovery. Development of a novel method for modelling dynamic structures of membrane proteins. Is an AODE for predicting p...

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http://mizuguchilab.org/opportunites/for-students

Appilcations of target prioritization. From molecular mechanisms of breast cancer cell growth to novel therapeutic strategies. Prediction of protein-protein interactions. What is target prioritization and why? What is target validation? Target discovery through network-based function prediction. Development of an international pharmaceutical innovation value chain for in silico drug discovery. Development of a novel method for modelling dynamic structures of membrane proteins. 3 Fee waivers and limited f...

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Appilcations of target prioritization. From molecular mechanisms of breast cancer cell growth to novel therapeutic strategies. Prediction of protein-protein interactions. What is target prioritization and why? What is target validation? Target discovery through network-based function prediction. Development of an international pharmaceutical innovation value chain for in silico drug discovery. Development of a novel method for modelling dynamic structures of membrane proteins. 81 72 641 9890. Sequence an...

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Appilcations of target prioritization. From molecular mechanisms of breast cancer cell growth to novel therapeutic strategies. Prediction of protein-protein interactions. What is target prioritization and why? What is target validation? Target discovery through network-based function prediction. Development of an international pharmaceutical innovation value chain for in silico drug discovery. Development of a novel method for modelling dynamic structures of membrane proteins. Sequence and structural det...

mizuguchilab.org

Overview | Mizuguchi Laboratory

http://mizuguchilab.org/overview

Appilcations of target prioritization. From molecular mechanisms of breast cancer cell growth to novel therapeutic strategies. Prediction of protein-protein interactions. What is target prioritization and why? What is target validation? Target discovery through network-based function prediction. Development of an international pharmaceutical innovation value chain for in silico drug discovery. Development of a novel method for modelling dynamic structures of membrane proteins. Integrated database for gen...

mizuguchilab.org

Publications | Mizuguchi Laboratory

http://mizuguchilab.org/publications

Appilcations of target prioritization. From molecular mechanisms of breast cancer cell growth to novel therapeutic strategies. Prediction of protein-protein interactions. What is target prioritization and why? What is target validation? Target discovery through network-based function prediction. Development of an international pharmaceutical innovation value chain for in silico drug discovery. Development of a novel method for modelling dynamic structures of membrane proteins. Tsuchiya Y., Mizuguchi ...

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News | Mizuguchi Laboratory | Bioinfomatics Project

http://mizuguchilab.org/news

Appilcations of target prioritization. From molecular mechanisms of breast cancer cell growth to novel therapeutic strategies. Prediction of protein-protein interactions. What is target prioritization and why? What is target validation? Target discovery through network-based function prediction. Development of an international pharmaceutical innovation value chain for in silico drug discovery. Development of a novel method for modelling dynamic structures of membrane proteins. CBI Annual Meeting 2016.

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MultiCoMP: Database of Multiple Conformations of Membrane Proteins

Database of Multiple Conformations of Membrane Proteins. 1 Search or Browse. 2 Select a reference protein. Is a database for exploring multiple conformations of membrane proteins. To find your protein of interest and view the multiple conformations that your protein is known to adopt. more. Browse the list of membrane proteins from the Stephen White Laboratory ( Membrane Proteins of Known 3D Structure. 62; Go to White's List Page. 62; Go to TC Tree Page. 62; Go to OPM Tree Page. Protein Cutoff X (%).

multicomp.nibiohn.go.jp

MultiCoMP: Database of Multiple Conformations of Membrane Proteins

Database of Multiple Conformations of Membrane Proteins. 1 Search or Browse. 2 Select a reference protein. Is a database for exploring multiple conformations of membrane proteins. To find your protein of interest and view the multiple conformations that your protein is known to adopt. more. Browse the list of membrane proteins from the Stephen White Laboratory ( Membrane Proteins of Known 3D Structure. 62; Go to White's List Page. 62; Go to TC Tree Page. 62; Go to OPM Tree Page. Protein Cutoff X (%).

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