nbrowse.ccbr.utoronto.ca

Generic Genome Browser

Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. To find out more about...

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Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. To find out more about...

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2 data/www/gbrowse/html/ tutorial

3 data/www/gbrowse/html/ example scripts

4 example databases

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6 advanced example

7 yeast renderfarm example

8 etc/init d/gbrowse start

9 alternative urls

10 http / your host/gb2/gbrowse/yeast

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Generic Genome Browser | nbrowse.ccbr.utoronto.ca Reviews

https://nbrowse.ccbr.utoronto.ca

Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. To find out more about...

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GBrowse Administration Tutorial

http://nbrowse.ccbr.utoronto.ca/tutorial/tutorial.html

Generic Genome Browser Version 2: A Tutorial for Administrators. Author: Lincoln Stein, 20 January 2010. This is an extensive tutorial to take you through the main features and gotchas of configuring GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD, BioPerl and the other GBrowse dependencies. If you haven't, please see the GBrowse HOWTO. During most of the tutorial, we will be using the "in-memory" GBrowse database (no relational database required! To introduce you to...

2

YeTFaSCo motifs: 1 kbp from chr1:119,345..120,345

http://nbrowse.ccbr.utoronto.ca/cgi-bin/gb2/gbrowse/yeast

YeTFaSCo: Yeast Transcription Factor Specificity Compendium. YeTFaSCo Version 1.02. Help with this browser. Show my user ID. YeTFaSCo motifs: 1 kbp from chr1:119,345.120,345. Chr1:80,000.120,000. Download Decorated FASTA File. Transcription model - S. cerevisiae. Show 1.001 kbp. Binding Sites ( Showing 231 of 231 subtracks. In vitro nucleosome occupancy. In vivo nucleosome occupancy. Help with uploading custom tracks]. There are no tracks yet. Add custom tracks : [From text].

3

YeTFaSCo motifs: 1 kbp from chr1:119,345..120,345

http://nbrowse.ccbr.utoronto.ca/fgb2/gbrowse/yeast_renderfarm

YeTFaSCo: Yeast Transcription Factor Specificity Compendium. YeTFaSCo Version 1.02. Help with this browser. Show my user ID. YeTFaSCo motifs: 1 kbp from chr1:119,345.120,345. Chr1:80,000.120,000. Download Decorated FASTA File. Transcription model - S. cerevisiae. Show 1.001 kbp. Binding Sites ( Showing 231 of 231 subtracks. In vitro nucleosome occupancy. In vivo nucleosome occupancy. Help with uploading custom tracks]. There are no tracks yet. Add custom tracks : [From text].

4

YeTFaSCo motifs: 1 kbp from chr1:119,345..120,345

http://nbrowse.ccbr.utoronto.ca/fgb2/gbrowse/yeast_advanced

YeTFaSCo: Yeast Transcription Factor Specificity Compendium. YeTFaSCo Version 1.02. Help with this browser. Show my user ID. YeTFaSCo motifs: 1 kbp from chr1:119,345.120,345. Chr1:80,000.120,000. Download Decorated FASTA File. Transcription model - S. cerevisiae. Show 1.001 kbp. Binding Sites ( Showing 231 of 231 subtracks. In vitro nucleosome occupancy. In vivo nucleosome occupancy. Help with uploading custom tracks]. There are no tracks yet. Add custom tracks : [From text].

5

YeTFaSCo motifs: 1 kbp from chr1:119,345..120,345

http://nbrowse.ccbr.utoronto.ca/gb2/gbrowse/yeast_advanced

YeTFaSCo: Yeast Transcription Factor Specificity Compendium. YeTFaSCo Version 1.02. Help with this browser. Show my user ID. YeTFaSCo motifs: 1 kbp from chr1:119,345.120,345. Chr1:80,000.120,000. Download Decorated FASTA File. Transcription model - S. cerevisiae. Show 1.001 kbp. Binding Sites ( Showing 231 of 231 subtracks. In vitro nucleosome occupancy. In vivo nucleosome occupancy. Help with uploading custom tracks]. There are no tracks yet. Add custom tracks : [From text].

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Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. To find out more about...

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