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Network of Cancer Genes

Citations and Funding Agencies. Insert a gene identifier. Gene Symbol ( e.g. Use * for multiple genes). Entrez Gene ID ( e.g. RefSeq Protein Identifier ( e.g. RefSeq mRNA Identifier ( e.g. Ensembl Protein ID ( e.g. Insert a list of cancer gene identifiers. Search for cancer genes within a genomic region. Insert a target gene or miRNA identifier. Target Gene Symbol ( e.g. Target Gene Entrez ID ( e.g. MiRNA Identifier ( e.g. Insert a miRNA identifier. MiRNA Identifier ( e.g. NCG 40 reports information on:.

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Network of Cancer Genes | ncg.kcl.ac.uk Reviews

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Citations and Funding Agencies. Insert a gene identifier. Gene Symbol ( e.g. Use * for multiple genes). Entrez Gene ID ( e.g. RefSeq Protein Identifier ( e.g. RefSeq mRNA Identifier ( e.g. Ensembl Protein ID ( e.g. Insert a list of cancer gene identifiers. Search for cancer genes within a genomic region. Insert a target gene or miRNA identifier. Target Gene Symbol ( e.g. Target Gene Entrez ID ( e.g. MiRNA Identifier ( e.g. Insert a miRNA identifier. MiRNA Identifier ( e.g. NCG 40 reports information on:.

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1 network of cancer genes

2 ncg

3 ncg cancer

4 ncg ifom

5 ncg ieo

6 cancer driver

7 whole genome

8 whole exome

9 recurrently mutated cancer genes

10 next generation sequencing

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ncg home,old versions,statistics,download,lab home,mobile app,cancer genes,accepted identifiers,pten,multiple query,chrx,chry,start,browse lists,mirna cancer gene interactions,oncomirs,duplicability,orthology,evolutionary appearance,interactions,function

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Network of Cancer Genes | ncg.kcl.ac.uk Reviews

https://ncg.kcl.ac.uk

Citations and Funding Agencies. Insert a gene identifier. Gene Symbol ( e.g. Use * for multiple genes). Entrez Gene ID ( e.g. RefSeq Protein Identifier ( e.g. RefSeq mRNA Identifier ( e.g. Ensembl Protein ID ( e.g. Insert a list of cancer gene identifiers. Search for cancer genes within a genomic region. Insert a target gene or miRNA identifier. Target Gene Symbol ( e.g. Target Gene Entrez ID ( e.g. MiRNA Identifier ( e.g. Insert a miRNA identifier. MiRNA Identifier ( e.g. NCG 40 reports information on:.

INTERNAL PAGES

ncg.kcl.ac.uk

1

NCG Statistics

http://ncg.kcl.ac.uk/statistics.php

Summary of Cancer Genes. List of Primary Sites and Cancer Types. Number of Cancer Genes per Primary Site. Recurrence of Cancer Genes in 24 Primary Sites. Venn Diagram of Possible False Positives. Summary of Cancer Genes. WGS, WES, Gene panels. List of Primary Sites and Cancer Types. Number of Cancer Genes per Primary Site. Recurrence of Cancer Genes in 24 Primary Sites. Venn Diagram of Possible False Positives. Style adapted from www.freecsstemplates.org.

2

miRNA-gene interactions of

http://ncg.kcl.ac.uk/mirna.php?id=PTEN&mirna=mirna

MiRNA-gene interactions for the gene PTEN. Please wait, loading 30 nodes. Network displayed using Cytoscapeweb v. 1.0.3. MiRNA-gene interaction network for the gene PTEN. Last Universal Common Ancestor. Last Universal Common Ancestor. Last Universal Common Ancestor. Last Universal Common Ancestor. Last Universal Common Ancestor. Last Universal Common Ancestor. Last Universal Common Ancestor. Last Universal Common Ancestor. Last Universal Common Ancestor. Last Universal Common Ancestor.

3

NCG Help

http://ncg.kcl.ac.uk/help.php

NCG collects 1,571 cancer genes. Cancer Gene Census (CGC). Screenings of predefined gene panels. Whole-exome sequencing (WES) of cancer samples. Whole-genome sequencing (WGS) of cancer samples. For each cancer gene, NCG provides information on:. From the homepage the user may retrieve the information from the database in several ways:. Retrieve gene information for a single gene or a user-defined list of genes;. Browse and retrieve the genes related to study of interest;. Known Cancer Genes;. The filters...

4

NCG Old Versions

http://ncg.kcl.ac.uk/old_versions.php

Http:/ ncg.kcl.ac.uk/ncg4/. Reference: An O., Pendino V., D'Antonio M., Ratti E., Gentilini M. and Ciccarelli F.D. Database. Http:/ bio.ieo.eu/ncg3/. Reference: D'Antonio M., Pendino V., Sinha S. and Ciccarelli F.D. Nucleic Acids Res. Http:/ bio.ieo.eu/ncg2/. Reference: Syed A.S., D'Antonio M. and Ciccarelli F.D. Nucleic Acids Res. Style adapted from www.freecsstemplates.org.

5

NCG Download

http://ncg.kcl.ac.uk/download.php

To download the list of 1,571 protein-coding cancer genes. Please cite our most recent publication if you use any information on this website. Style adapted from www.freecsstemplates.org.

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guangchuangyu.github.io

clusterProfiler

https://guangchuangyu.github.io/clusterProfiler

ClusterProfiler: statistical analysis and visualization of functional profiles for genes and gene clusters. Projects that depend on clusterProfiler. ClusterProfiler: statistical analysis and visualization of functional profiles for genes and gene clusters. Package implements methods to analyze and visualize functional profiles of genomic coordinates (supported by ChIPseeker), gene and gene clusters. Is released within the Bioconductor. Project and the source code is hosted on. Wang L, Han Y and He Q.

bioinfoblog.it

projects – bioinfoblog.it

http://bioinfoblog.it/category/projects

Are fitness genes more conserved across species? My first 30-minutes attempt. December 29, 2015. Giovanni Marco Dall'Olio. A recently published paper by Hart et al. Presented a genome-wide CRISPR screening to identify fitness genes (a superset of essential genes) in five cell lines. The paper is quite impressive and shows the potentiality of CRISPR to generate large scale knockouts and to characterize the importance and function of genes in different conditions. NCG enrichment implemented in DOSE. For im...

bioinfoblog.it

bioinfoblog.it – Page 2 – bioinformatics, human genetics, cancer, and nerdish stuff

http://bioinfoblog.it/page/2

Solidarity to the workers of the Mario Negri Sud institute. March 22, 2015. Giovanni Marco Dall'Olio. I don’t usually post online petitions, but this is a bit personal to me as it regards the closure of a big research institute close to my hometown in Italy. On polycythemia vera (a rare cancer) published on NEJM just before financial problems halted most of the research, and more work by a neuroscientist. Who was really affected by the stress of the situation. The Negri Sud institute. Click here. Is a pr...

bioinfoblog.it

ncg – bioinfoblog.it

http://bioinfoblog.it/tag/ncg

NCG enrichment implemented in DOSE. April 1, 2015. Giovanni Marco Dall'Olio. I would like to give a big thanks to Guangchuang Yu. The author of many cool R libraries like GoSemSim. For implementing a Network of Cancer Genes enrichment function in the DOSE R library. The new function is called enrichNCG, and can be found in the github version of DOSE. Library(devtools) code /code install github(c("GuangchuangYu/DOSE", "GuangchuangYu/clusterProfiler") library(DOSE) dev mode() mygenes = as.character(400...

bioinfoblog.it

The Network of Cancer Genes database – bioinfoblog.it

http://bioinfoblog.it/2015/03/the-network-of-cancer-genes-database

The Network of Cancer Genes database. April 9, 2015. Giovanni Marco Dall'Olio. In the last year I have been part of the team maintaining and updating the Network of Cancer Genes. Database, also known as NCG. The Network of Cancer Genes database. The main focus of NCG. NCG is a small database and is not supported by any big consortium, but we do our best to fill our niche :-). The following list will describe you what you can get from NCG and how can it be useful to you. PTEN, a known tumor suppressor, ha...

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Network of Cancer Genes

Citations and Funding Agencies. Insert a gene identifier. Gene Symbol ( e.g. Use * for multiple genes). Entrez Gene ID ( e.g. RefSeq Protein Identifier ( e.g. RefSeq mRNA Identifier ( e.g. Ensembl Protein ID ( e.g. Insert a list of cancer gene identifiers. Search for cancer genes within a genomic region. Insert a target gene or miRNA identifier. Target Gene Symbol ( e.g. Target Gene Entrez ID ( e.g. MiRNA Identifier ( e.g. Insert a miRNA identifier. MiRNA Identifier ( e.g. NCG 40 reports information on:.

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