
netpath.org
NetPath - Signal Transduction PathwaysNetPath is a curated resource of signal transduction pathways in humans
http://www.netpath.org/
NetPath is a curated resource of signal transduction pathways in humans
http://www.netpath.org/
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Johns Hopkins University
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NetPath - Signal Transduction Pathways | netpath.org Reviews
https://netpath.org
NetPath is a curated resource of signal transduction pathways in humans
NetPath - Signal Transduction Pathways
http://www.netpath.org/queryGeneRegulation
Search Transcriptionally Regulated Genes. This is a joint project between:.
NetSlim
http://www.netpath.org/netslim
NetSlim' is a resource of high-confidence signaling pathway maps derived from NetPath pathway reactions. 40-60% of the molecules and their reactions in NetPath pathways are available in NetSlim. These reactions are filtered by applying confidence criteria, the NetSlim criteria. NetSlim versions are available for all signaling pathways in NetPath. Please cite the following reference for this database:. Raju, R. et al. (2011) NetSlim: high-confidence curated signaling maps. Database.
NetPath - Signal Transduction Pathways
http://www.netpath.org/citations
A public resource of curated signal transduction pathways. Genome Biology. 10 cancer signaling pathways and 10 immune signaling pathways). High-confidence curated signaling maps. Database. Signaling pathway. Database. 4 Nanjappa, V., Raju, R., Muthusamy, B., Sharma, J., Thomas, J. K., Nidhina, P. A. H., Harsha, H. C., Pandey, A., Anilkumar G. and Prasad, T. S. K. (2011). A comprehensive curated reaction map of leptin. Signaling pathway. Journal of Proteomics and Bioinformatics. 4: 184-189. [PubMed].
NetPath - Signal Transduction Pathways
http://www.netpath.org/faqs
Why was the NetPath project started? What are the various features that are annotated in every pathway? Each pathway has information pertaining to protein-protein interactions that occur upon ligand stimulation of a receptor, enzyme catalysis events, translocation of proteins from one subcellular compartment to another and genes which are up or downregulated by the pathway. All these events are together termed as reactions. What are your criteria for selecting a gene as up or down regulated by a ligand?
NetPath - Signal Transduction Pathways
http://www.netpath.org/index.html
Search Transcriptionally Regulated Genes. Is a manually curated resource of signal transduction pathways in humans. It is a collaborative effort between the PandeyLab. At Johns Hopkins University and the Institute of Bioinformatics. The initial set of 10 cancer signaling pathways were developed in collaboration with the Computational Biology Center. At Memorial Sloan-Kettering Cancer Center and with Gary Bader's lab. At the University of Toronto for the ' Cancer Cell Map. PSI-MI version 2.5.
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Computational Biology: Systems Biology Weblinks
http://www.systems-biology.com/links.html
Quality Management / Certificates. Selection of systems biology resources - not complete but growing . Below you find links to resources that might be useful for computational systems biology research. Often these links are accompanied with a short description, generally copied/cited from the source (as indicated by quotes). We do not take responsibilty for these information, as is also detailed in the. General Conditions of Use. KEGG (Encyclopedia genes and genomes). UniHI (Unified Human Interactome).
GenMAPP - About Us
http://root2.genmapp.org/about.html
GenMAPP.org is an academic organization that develops and supports GenMAPP (Gene Map Annotator and Pathway Profiler), a computer application designed to visualize gene expression data on maps representing biological pathways and groupings of genes. GenMAPP-CS will incorporate core capabilities of Cytoscape, while adding GenMAPP-specific functionality. To learn more about specific aims for the GenMAPP-CS project, please visit our GenMAPP-CS wiki. Is an open, public space for content editing dedicated to b...
Human Protein Reference Database
http://www.hprd.org/help
You are at: HPRD. Replace this with your comments). Please send any questions or comments about the Human Protein Reference Database to help. This is a joint project between:.
Human Protein Reference Database
http://www.hprd.org/blast_page
You are at: HPRD. Please send any questions or comments about the Human Protein Reference Database to help. This is a joint project between:.
Institute of Bioinformatics
http://www.ibioinformatics.org/resources.php
Databases developed at IOB:. The Human Proteome Map. HPM - http:/ humanproteomemap.org. Human Protein Reference Database. HPRD - http:/ www.hprd.org ). Is a centralized platform that stores and disseminates various information such as protein-protein interactions, post-translational modifications, tissue expression, sub-cellular localizations and enzyme-substrate relationships in normal condition. It stores these details for the currently known 30,047 human proteins. All information in this resou...NetPa...
Human Protein Reference Database
http://www.hprd.org/index_html
You are at: HPRD. Human Proteinpedia enables data sharing of human proteins" in February 2008 issue of Nature Biotechnology. PhosphoMotif Finder, published in February 2007 issue of Nature Biotechnology. Comparison of Protein-Protein Interaction Databases, published in BMC Bioinformatics. Allows you to check if your protein contains any phosphorylation motif described in the literature. The latest Release 9 is available for download. Click here . FOR FURTHER INFORMATION ABOUT LICENSING.
Pandey Lab Links
http://pandeylab.igm.jhmi.edu/links.html
Human Proteome Map - A draft map of the human proteome. Human Proteinpedia - A community portal for sharing and integration of human protein data. Stable isotope labeling with amino acids in cell culture (SILAC). Human Protein Reference Database. NetPath - A curated resource of signal transduction pathways. Human Protein Atlas (HPA). Databases: nrdb95, swissprot, pdb, sp nrdb, nrdb.
Human Protein Reference Database
http://www.hprd.org/query
You are at: HPRD. S T Y Kinase. Adipose tissue stromal cell. Basal nucleus of Meynert. Basal plate extravillous trophoblast cell. Bed nucleus of the Stria terminalis. Bone marrow stromal cell. Chorionic villus endothelial cell. Dermal microvascular endothelial cell. High endothelial venule endothelial cell. Inferior olivary nuclear complex. Interstitial cell of Cajal. Longitudinal smooth muscle cell. Mature gut mucosal epithelium. Nasal tissue epithelial cell. Nuclei of accessory nerves. You can also use...
Human Protein Reference Database
http://www.hprd.org/moleculeClass
You are at: HPRD. Please select a molecule class to browse :. B cell antigen receptor. Cell cycle control protein. Extracellular ligand gated channel. G protein coupled receptor. Guanine nucleotide exchange factor. Intracellular ligand gated channel. Ion channel, other. Secreted polypeptide, miscellaneous. T cell antigen receptor. Ubiquitin proteasome system protein. Please send any questions or comments about the Human Protein Reference Database to help. This is a joint project between:.
Human Protein Reference Database
http://www.hprd.org/query_pubmed
You are at: HPRD. Please send any questions or comments about the Human Protein Reference Database to help. This is a joint project between:.
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NetPath.info | Net Info
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NetPath - Signal Transduction Pathways
Search Transcriptionally Regulated Genes. Is a manually curated resource of signal transduction pathways in humans. It is a collaborative effort between the PandeyLab. At Johns Hopkins University and the Institute of Bioinformatics. The initial set of 10 cancer signaling pathways were developed in collaboration with the Computational Biology Center. At Memorial Sloan-Kettering Cancer Center and with Gary Bader's lab. At the University of Toronto for the ' Cancer Cell Map. PSI-MI version 2.5.
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