bioinformatictools.blogspot.com
Bioinformatics Tools: In-silico characterization of proteins
http://bioinformatictools.blogspot.com/2011/11/in-silico-characterization-of-proteins.html
Bioinformatics has evolved as a great tool for molecular biologists. There are various tools available for helping in reducing the time required to analyze biological materials be it DNA, RNA, Proteins etc. I wish to list here few of the commonly used tools. Please send me suggestions to improve the content. If you like or dislike something, let me know, your inputs matters. contact me: drsanjivk[at]gmail[dot]com. Saturday, November 5, 2011. In-silico characterization of proteins. Different combinations ...
rekinect.info
ReKINect FAQ
http://www.rekinect.info/FAQ
ReKINect - Frequently Asked Questions. In a nutshell, what does ReKINect do? ReKINect is a computational framework that predicts the likely functionality of mutations. What do you mean with "likely functionality"? Can you be more specific? Ok, so what type of functional residues are currently been used? We are currently mapping onto 3 different types of functional residues:. A - Essential residues in protein domains (Kinase and SH2 domains). C - Phosphorylation sites in any protein. Every single amino-ac...
cbs.dtu.dk
CBS Prediction Servers
http://www.cbs.dtu.dk/services
This page is the main entry to the on-line prediction services at CBS. All the servers are available as interactive input forms. In order to view the full documentation and use a server click on the appropriate link in the list below. The access to all the servers is free and unlimited for all academic users. For other users the access is also free but limited (see the details. Of the access policy). Tab above to download software. Whole genome visualization and analysis. Gene finding and splice sites.
koehn.embl.de
DEPOD - human DEPhOsphorylation Database
http://www.koehn.embl.de/depod/index.php
226 human active and 11 inactive phosphatases in total;. 194 phosphatases have substrate data;. 305 protein substrates;. 89 non-protein substrates;. 1114 dephosphorylation interactions;. 213 KEGG pathways;. 206 NCI Nature PID pathways. 560 Reactome pathways;. Last update: 18 Feb, 2016. Gene name), PTP1B. Protein name), P18031. UniProt AC), ENSG00000196396. Ensembl gene ID), 5770. Gene name), ERK2. Protein name), P28482. UniProt AC), PI3P. Or D-fructose 1,6-bisphosphate. Enter sequence below in FASTA.
phospho.elm.eu.org
Phospho.ELM Links
http://phospho.elm.eu.org/links.html
A database of S/T/Y phosphorylation sites. Phospho.ELM related links. DISPHOS computationally predicts serine, threonine and tyrosine phosphorylation sites in proteins. Resource for prediction functional sites in eukaryotic proteins. Group-based phosphorylation scoring methods. Is an atlas of consensus sequence motifs for kinases and phosphorylation-dependent binding domains. Prediction of Ser, Thr and Tyr phosphorylation sites using neural network. Systematic discovery of in vivo phosphorylation networks.
dynactome.mshri.on.ca
The Pawson Lab - Home
http://dynactome.mshri.on.ca/index.php
SELPHI: correlation-based identification of kinase-associated networks. SELPHI: correlation-based identification of kinase-associated networks. People and Contact Info. Wednesday, 11 September 2013. Tony Pawson about science. Tony Pawson's Kyoto Prize Commemorative Lecture in Kyoto Japan. Last Updated ( Monday, 23 June 2014 ). SELPHI: correlation-based identification of kinase-associated networks. Written by Karen Colwill. Wednesday, 06 May 2015. Last Updated ( Friday, 05 June 2015 ). Homology 2 domain c...
