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Neural Ensemble News: ANN: HoloViews 1.0 data visualization and ImaGen 2.0 pattern generation in Python
http://neuralensemble.blogspot.com/2015/04/we-are-pleased-to-announce-first-public.html
Wednesday, April 1, 2015. ANN: HoloViews 1.0 data visualization and ImaGen 2.0 pattern generation in Python. We are pleased to announce the first public release of HoloViews, a free Python package for scientific and engineering data visualization:. Http:/ ioam.github.io/holoviews. And version 2.0 of ImaGen, a free Python package for generating two-dimensional patterns useful for vision research and computational modeling:. Http:/ ioam.github.io/imagen. ImaGen 2.0 uses the continuous coordinate system...
Neural Ensemble News: Docker image to run the software neural simulators used in BrainScaleS
http://neuralensemble.blogspot.com/2014/03/docker-image-to-run-software-neural_3.html
Monday, March 3, 2014. Docker image to run the software neural simulators used in BrainScaleS. Docker is like a virtual machine (Virtualbox, VMware,.) but with one huge advantage for everyone wanting to run a neural simulator on his own computer: being based on Linux containers, a Docker image can use all the resources (CPUs, RAMs) of your host computer. NEST (version 2.2.2). NEURON (version 7.3). Brian (latest version from PyPI, currently 1.4.1). Sudo apt-get install lxc-docker. To run the examples from...
Neural Ensemble News: March 2015
http://neuralensemble.blogspot.com/2015_03_01_archive.html
Thursday, March 12, 2015. Students: spend the summer improving brain research software tools in Google Summer of Code. From Malin Sandström at the INCF:. Are you a student interested in brain research and software development? Or do you know one? You can see our full list of projects here:. To be eligible, students must fulfill the Google definition of 'student':. Student applications open on. Monday, March 16. GSoC questions welcome to:. Subscribe to: Posts (Atom). PyNN 0.8.1 released. Summer School "Ad...
Neural Ensemble News: PyNN 0.8 beta 1 released
http://neuralensemble.blogspot.com/2013/11/pynn-08-beta-1-released.html
Tuesday, November 19, 2013. PyNN 0.8 beta 1 released. We're very happy to announce the first beta release of PyNN 0.8. For PyNN 0.8 we have taken the opportunity to make significant, backward-incompatible. Changes to the API. The aim was fourfold:. To simplify the API, making it more consistent and easier to remember;. To make the API more powerful, so more complex models can be expressed with less code;. To allow a number of internal simplifications so it is easier for new developers to contribute;.
Neural Ensemble News: April 2015
http://neuralensemble.blogspot.com/2015_04_01_archive.html
Wednesday, April 8, 2015. Elephant 0.1.0 released. We are pleased to announce the first release of the Elephant. Toolbox for the analysis of neurophysiology data. Data model, and takes advantage of the broad file-format support provided by the Neo library. A bridge to the Pandas. Data analysis library is also provided. Either to contribute your own code or to help with code review and testing. Elephant is the direct successor to NeuroTools. As a simple example, let's generate some artificial spike train ...
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OpenElectrophy - NeuralEnsemble
http://www.neuralensemble.org/OpenElectrophy
The OpenElectrophy project aims to simplify data- and analysis-sharing for intra- and extra-cellular recordings. In short with OpenElectrophy you will be able to play with neural signals, spikes and oscillations. OpenElectrophy is a Python module for electrophysiology data analysis (intra- and extra-cellular). OpenElectrophy is built on top of Neo :. It includes the powerful Neo IO that can read a large number of data formats (Plexon, NeuroExplorer, Spike2, TDT, Axon, BlackRock, .). A database for storage.
Neo - NeuralEnsemble
http://neuralensemble.org/neo
Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats, including Spike2, NeuroExplorer, AlphaOmega, Axon, Blackrock, Plexon, Tdt, and support for writing to a subset of these formats plus non-proprietary formats including HDF5. The goal of Neo is to improve interoperability between Python tools for analyzing, visualizing and generating electrophysiology data (such as OpenElectrophy.
NEST - NeuralEnsemble
http://www.neuralensemble.org/NEST
NEST is a simulator for spiking neural network models from small-scale microcircuits to brain-scale networks of the order of 10 8 neurons and 10 12 synapses. The same code can be used on a large range of architectures from laptops and workstations to HPC clusters and supercomputer. The development of NEST is driven by the demands of the neuroscientific community and carried out by the NEST Initiative, a collaboration between the members of different academic institutes. The NeuralEnsemble Initiative, 201...
Projects - NeuralEnsemble
http://www.neuralensemble.org/projects
Brian is a simulator for spiking neural networks available on almost all platforms. The motivation for this project is that a simulator should not only save the time of processors, but also the time of scientists. Elephant is a package for the analysis of neurophysiology data, using Neo data structures. An integrated workflow framework for large scale neural simulations. The OpenElectrophy project aims to simplify data- and analysis-sharing for intra- and extra-cellular recordings. In short with Open...
PyNN - NeuralEnsemble
http://neuralensemble.org/PyNN
A Python package for simulator-independent specification of neuronal network models. Is a simulator-independent language for building neuronal network models. In other words, you can write the code for a model once, using the PyNN API and the Python programming language, and then run it without modification on any simulator that PyNN supports (currently NEURON. Or by writing your own Python code. In NEURON, while. In NEST and a. Davison AP, Brüderle D, Eppler JM, Kremkow J, Muller E, Pecevski DA, Perrine...
FACETS CodeJam Workshop #3 - NeuralEnsemble
http://neuralensemble.org/meetings/CodeJam3.html
FACETS CodeJam Workshop #3. 7th-9th October 2009, Freiburg, Germany. Freiburger Rathaus - source: Luidger. With permission under terms of GFDL. Focused on adding or improving Python support for different neuroscience simulators, and on the PyNN common simulator API. The focus for the second CodeJam was expanded to include the next stages in the simulation workflow - analysis and visualisation of simulation results, and management of simulation projects to promote reproducibility and reliability. Bernstei...
SpykeViewer - NeuralEnsemble
http://www.neuralensemble.org/SpykeViewer
Spyke Viewer is a multi-platform GUI application for navigating, analyzing and visualizing data from electrophysiological experiments or neural simulations. It is based on the Neo. Library, which enables it to load a wide variety of data formats used in electrophysiology. At its core, Spyke Viewer includes functionality for navigating Neo object hierarchies and performing operations on them. Users can download and share additional plugins and other extensions at the Spyke Repository.
Brian - NeuralEnsemble
http://www.neuralensemble.org/brian
Brian is a simulator for spiking neural networks available on almost all platforms. The motivation for this project is that a simulator should not only save the time of processors, but also the time of scientists. For more information, see the Brian home page. The NeuralEnsemble Initiative, 2013. The NeuralEnsemble website, and much of the software development, is supported by the BrainScaleS project.
Meetings - NeuralEnsemble
http://www.neuralensemble.org/meetings
HBP CodeJam Workshop #7. 11th-14th January 2016, Manchester, UK. The goal of the CodeJam workshops is to catalyze open-source, collaborative software development in computational and systems neuroscience and neuroinformatics. By bringing together researchers, students and engineers to share ideas, present their work, and write code together. The 7th CodeJam was sponsored by the Human Brain Project. HBP Hippocamp CA1: Collaborative and Integrative Modeling of Hippocampal Area CA1. The goal of the CodeJam ...
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Neural Engineering Center
Georgia Institute of Technology. Researchers have for the first time precisely manipulated the bursting activity of cells in the thalamus. Researchers have created a technology called the optoclamp which closes the loop in optogenetic systems. Buzzing the Vagus Nerve Just Right to Fight Inflammatory Disease. An electric buzz to the vagus can fight chronic inflammation - this fine-tune makes it even better. Noninvasive Visual Stimulation May Illuminate a Path for Alzheimer’s Disease Treatment. GTvisitor W...
neuralengineering.info
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neuralengineering.net
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Neural Engineering Group - Department of Biomedical Engineering, The City College of New York, CUNY
Department of Biomedical Engineering. The City College of New York, CUNY. The Neural Engineering Group at The City College of New York analyzes nervous system function at multiple scales spanning sub-cellular, single cell, tissue, animal, to human cognitive levels. Similarly, our translational research and development program integrates experimental testing, medical device development, and clinical trials with the over-arching goal of improving human health through engineering innovation.
Binaural Beats From NeuralEnhancer.Com
Binaural Beats – Brain Music From NeuralEnhancer.Com. Binaural beats brain music gives you the opportunity to rapidly achieve whatever mental state you wish for. They are incredibly powerful, and can bring amazing results. Whatever you are wishing to achieve within you mind there are binaural beats mp3 download tracks to help you here on NeuralEnhancer.Com. Check Out The Various Binaural Beat Mp3 Download Options. Binaural Beats Download (All). Binaural Beats For Studying. CONCLUSIONS: Findings to date s...
Neural Ensemble News
Thursday, April 20, 2017. PyNN 0.9.0 released. I'm happy to announce the release of PyNN 0.9.0! This version of PyNN adopts the new, simplified Neo. Object model, first released as Neo 0.5.0, for the data structures returned by. For more information on the new Neo API, see the Neo release notes. The main difference for a PyNN user is that the. Class has been renamed to. Attribute is now called. Pronounced 'pine') is a simulator-independent language for building neuronal network models. Neo is a Python li...
Home - NeuralEnsemble
NeuralEnsemble is a community-based initiative to promote and co-ordinate open-source software development in neuroscience. NeuralEnsemble hosts a number of software projects for computational and systems neuroscience, including PyNN. There is a NeuralEnsemble Google group. For discussion of collaborative neuroscience software development (mainly in Python, but users of other languages are welcome! Increasingly, the real limit on what computational scientists can accomplish is how quickly and reliably th...
neuralentanglement.com
The science of consciousness. On November 12, 2010, in Consciousness. The term consciousness has been under scrutiny since mankind evolved into a conscious being. To be conscious is to be able to ask questions about that very topic. What is Consciousness? Where does it come from? How does it evolve? What is its composition? And how can you separate your conscious self from the material world? So how far does the the science of consciousness go? How can we point out a system that we find so hard to define.
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