docs.openworm.org
Resources - OpenWorm
http://docs.openworm.org/en/latest/Resources/resources
Muscle / Neuron / Channel. This page describes content that has been created by the project for use by the public. Currently we make simulation engines, visualization environments, and data sets available. Sibernetic is the code base that currently implements the crawling model. Sibernetic is a C / Python code base by Palyanov, Khayrulin and Vella that has been created expressly for the purpose of doing research and building the model quickly. More information on running Sibernetic is available online.
comodl.com
Open Source Brain
http://www.comodl.com/docs
Welcome to Open Source Brain! We hope youll find the information you require here, but if not, please get in touch. Browse the projects currently available on OSB ¶. Here is a quick video showing some of the tools you can use for browsing the projects on OSB. Explore cells and networks in 3D ¶. Here you can find a video showing how you can use the OSB Explorer to visualise cells and network models in 3D. Browse one of the projects ¶. Granule Cell by Solinas et al. 2010. Directory), see here. This is the ...
terbios.org
Computing and Soft
http://www.terbios.org/computing-and-soft
Modeling and Data Sources. Http:/ econnectome.umn.edu/. Website for eConnectome (A MATLAB Toolbox for Mapping and Imaging of Brain Functional Connectivity). Http:/ psychophysiology.cpmc.columbia.edu. Current Source Density (CSD) Interpolation using Spherical Splines. Http:/ www.urut.ch/new/serendipity/index.php? Actively maintained software projects. Http:/ www.fil.ion.ucl.ac.uk/spm/. Http:/ www.fz-juelich.de/inm/inm-. Http:/ mialab.mrn.org/software/. Http:/ fsl.fmrib.ox.ac.uk/fsl/fslwiki/. Today the ent...
comodl.org
Open Source Brain
http://www.comodl.org/docs
Welcome to Open Source Brain! We hope youll find the information you require here, but if not, please get in touch. Browse the projects currently available on OSB ¶. Here is a quick video showing some of the tools you can use for browsing the projects on OSB. Explore cells and networks in 3D ¶. Here you can find a video showing how you can use the OSB Explorer to visualise cells and network models in 3D. Browse one of the projects ¶. Granule Cell by Solinas et al. 2010. Directory), see here. This is the ...
opensourcebrain.com
Open Source Brain
http://opensourcebrain.com/docs
Welcome to Open Source Brain! We hope youll find the information you require here, but if not, please get in touch. Browse the projects currently available on OSB ¶. Here is a quick video showing some of the tools you can use for browsing the projects on OSB. Explore cells and networks in 3D ¶. Here you can find a video showing how you can use the OSB Explorer to visualise cells and network models in 3D. Browse one of the projects ¶. Granule Cell by Solinas et al. 2010. Directory), see here. This is the ...
treestoolbox.org
TREES toolbox
http://www.treestoolbox.org/news.html
We published our dendrite scaling paper. In PNAS using the methods of the TREES toolbox. Uploaded version 1.15 of TREES toolbox with significant changes in the user interface (manual tree editing and reconstruction) and other minor bug fixes. 16 Mar. 2011. NeuroML export function added by Padraig Gleeson. This is useful for incorporation of TREES toolbox morphologies into neuroConstruct. 23 Feb. 2011. Our synthetic pyramidal cells created using the TREES toolbox received the Wellcome image award 2011.
neuroml.org
NeuroML - A Model Description Language for Computational Neuroscience
https://www.neuroml.org/tool_support
A Model Description Language for Computational Neuroscience. Specifications v1.8.1. Examples v1.8.1. Current Application Support For NeuroML. The following is a list of software applications which currently support NeuroML (last updated: March 2014). Note that not all tools support all parts of NeuroML. If you would like your application included on this list! It's only through user feedback that features like this will make it further up long TODO lists. Supports morphologically detailed single cells.
neurogems.org
NeuroGEMS - software for neuroinformatics
http://www.neurogems.org/index.html
Skip to main content. NeuroGems is a collection of neuroinformatics software modules for data and modelling in neuroscience. The emphasis is on tools for collaboration, visualisation and use of open XML standards. The project was an escience pilot project funded by the UK MRC and BBSRC and based at the Universities of Edinburgh, Newcastle and UCL running from 2002 - 2005. Follow-on projects are being developed by Textensor. Annotate service for online document collaboration. Project is a collaboration wh...
opensourcebrain.org
Open Source Brain
http://www.opensourcebrain.org/docs
Welcome to Open Source Brain! We hope youll find the information you require here, but if not, please get in touch. Browse the projects currently available on OSB ¶. Here is a quick video showing some of the tools you can use for browsing the projects on OSB. Explore cells and networks in 3D ¶. Here you can find a video showing how you can use the OSB Explorer to visualise cells and network models in 3D. Browse one of the projects ¶. Granule Cell by Solinas et al. 2010. Directory), see here. This is the ...
