mdcune.psych.ucla.edu
Swimmy — MDCUNE
https://mdcune.psych.ucla.edu/modules/swimmy
Only in current section. Free and complete software providing experience with neurophysiological phenomena and mechanisms of motor pattern generation in virtual neural circuits. Student manuals also provided. Is an instructional tool for teaching neurophysiology that requires only a computer. Swimmy. Is a virtual fish that swims, moving its virtual tail by means of a virtual neural circuit. Swimmy. Is available for free, along with student and instructor tutorials. Fall 2008, 7(1):A1-A8) about the Swimmy.
thekerrlab.com
The Kerr Lab | Software
http://thekerrlab.com/software.html
Neuroscience epidemiology computational methods. Python-NEURON Network Development Language). Traveling waves in a spiking model (Kerr, Lytton, et al., 2014). PYNE-NEDL is a framework that combines Python. To make it easy to build large-scale spiking network simulations. Although NEURON is often considered a detailed single-cell simulator, its efficient event-handling makes it suitable for modeling networks of simple neurons as well. Major contributors to PYNE-NEDL's development include George Chadderdon.
en.wikipedia.org
Blue Brain Project - Wikipedia, the free encyclopedia
https://en.wikipedia.org/wiki/Blue_Brain_Project
From Wikipedia, the free encyclopedia. The Blue Brain Project. Is an attempt to create a synthetic brain. Mammalian brain circuitry. The aim of the project, founded in May 2005 by the Brain and Mind Institute of the École Polytechnique Fédérale de Lausanne. EPFL) in Switzerland, is to study the brain's architectural and functional principles. The project is headed by the founding director Henry Markram. And co-directed by Felix Schürmann. And Sean Hill. Using a Blue Gene. Cajal Blue Brain (Spain). Betwee...
neuromanticapp.blogspot.com
The Neuromantic Blog: April 2007
http://neuromanticapp.blogspot.com/2007_04_01_archive.html
3D Neuronal Reconstruction from stacks of microscopy images. Semi-automatic tracing beta almost complete. Right, a fully working version of the semi-automatic tracing with radius estimation is basically complete - I'm just in the process of doing a little debugging with the GUI and increasing the user-friendliness before I post it. Some quick screenshots of a subtree I quickly (less than a minute) segmented:. The subtree rendered in 3D:. Posted by Neuromantic at 15:24. Links to this post. Neuromantic V1&...
neuromanticapp.blogspot.com
The Neuromantic Blog: August 2010
http://neuromanticapp.blogspot.com/2010_08_01_archive.html
3D Neuronal Reconstruction from stacks of microscopy images. Neuromantic V1.7.5 is available. As promised, here is a download link for the newest version of. Neuromantic (V1.7.5) produced for DIADEM. It's a bit.ly shortened. Link that lets me keep track of the number of downloads and vaguely. Where they're coming from, but it points directly to my DropBox. The contents of the zip should work in a self-contained fashion, and. Should not require any files from any previous downloads. Still need to be save ...
neuromanticapp.blogspot.com
The Neuromantic Blog: November 2007
http://neuromanticapp.blogspot.com/2007_11_01_archive.html
3D Neuronal Reconstruction from stacks of microscopy images. Neuromantic V1.5.2. The other minor thing it adds is a list of web links in the About menu, which mean that users can directly get to the Neuromantic user group and main page without having to remember the URLs. The next version (out soon), will actually add some proper functionality - I'm currently finishing off the ability to drag the reconstruction segments around in the 3D window. This will have two major advantages:. Links to this post.
neuromanticapp.blogspot.com
The Neuromantic Blog: March 2007
http://neuromanticapp.blogspot.com/2007_03_01_archive.html
3D Neuronal Reconstruction from stacks of microscopy images. OK, there hasn't been a new post on here for a while so I thought I'd do a quick update on progress with Neuromantic. Firstly, I've been busy finishing off a paper on results we got examining the inter-user variance of Neuromantic using the standard manual tracing. Now that's more or less done, I've had time to get back to some programming. Posted by Neuromantic at 11:10. Links to this post. Reading, Berkshire, United Kingdom.
neuromanticapp.blogspot.com
The Neuromantic Blog: June 2007
http://neuromanticapp.blogspot.com/2007_06_01_archive.html
3D Neuronal Reconstruction from stacks of microscopy images. Neuromantic V1.4.0 - How to use it! Yes, a new version of Neuromantic is *finally* available! Version 1.4.0 performs semi-automatic tracing of neurites by automatically tracing between user-defined beginning and end points. On a basic level, this new version should encompass almost all of the basic functionality of NeuronJ. But with the ability to trace in 3D and improved midline tracking on thicker dendrites. The associated right hand panel ha...
